Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6967 | 3' | -55.2 | NC_001875.2 | + | 30956 | 0.66 | 0.909675 |
Target: 5'- cGCCAUgGCGcccACGcgCGCGCUGcGCCUc -3' miRNA: 3'- -UGGUAgUGU---UGUa-GCGCGGCaCGGAc -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 66043 | 0.66 | 0.909675 |
Target: 5'- cGCCG-CGCAggcACcgCGCGCCGacGCCg- -3' miRNA: 3'- -UGGUaGUGU---UGuaGCGCGGCa-CGGac -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 103936 | 0.66 | 0.909675 |
Target: 5'- uUCAUaACGGCGUCGuCGCCGaugGCCa- -3' miRNA: 3'- uGGUAgUGUUGUAGC-GCGGCa--CGGac -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 129358 | 0.66 | 0.896845 |
Target: 5'- -gCAUCuGCAACAgaacgacgaucUCGUGCCGcGCCUa -3' miRNA: 3'- ugGUAG-UGUUGU-----------AGCGCGGCaCGGAc -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 1709 | 0.66 | 0.894163 |
Target: 5'- gGCCAcaaaugcugcgggCGCGACAccggUCGCGCCGccGCCg- -3' miRNA: 3'- -UGGUa------------GUGUUGU----AGCGCGGCa-CGGac -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 37503 | 0.66 | 0.890068 |
Target: 5'- gGCCG--GCGACGgugcggacgaCGCGCCcUGCCUGg -3' miRNA: 3'- -UGGUagUGUUGUa---------GCGCGGcACGGAC- -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 51425 | 0.66 | 0.890068 |
Target: 5'- uCCA--ACGACGaguuUCGUGCCGUGCUa- -3' miRNA: 3'- uGGUagUGUUGU----AGCGCGGCACGGac -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 29119 | 0.66 | 0.890068 |
Target: 5'- cGCCGUCGCAGCAaaagcacCGCGUCuUGUCg- -3' miRNA: 3'- -UGGUAGUGUUGUa------GCGCGGcACGGac -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 17813 | 0.66 | 0.883054 |
Target: 5'- uACCAUCugGACcgCGCGgCCGccaUGCg-- -3' miRNA: 3'- -UGGUAGugUUGuaGCGC-GGC---ACGgac -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 119541 | 0.66 | 0.880184 |
Target: 5'- gACCAcgcaCACGGCggCGUGCCGgcugcacacggugGCCUGc -3' miRNA: 3'- -UGGUa---GUGUUGuaGCGCGGCa------------CGGAC- -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 11192 | 0.67 | 0.875072 |
Target: 5'- cGCCGUuguggagCACGACGcCGCGCCGgacgagaagGCCg- -3' miRNA: 3'- -UGGUA-------GUGUUGUaGCGCGGCa--------CGGac -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 98678 | 0.67 | 0.868336 |
Target: 5'- uGCCucgaGCGGCAgcgCGaCGCCGUGCUg- -3' miRNA: 3'- -UGGuag-UGUUGUa--GC-GCGGCACGGac -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 2275 | 0.67 | 0.868336 |
Target: 5'- gGCCAUguUGACGUcgugaugcgcgCGCGCCGUGgCCg- -3' miRNA: 3'- -UGGUAguGUUGUA-----------GCGCGGCAC-GGac -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 18679 | 0.67 | 0.868336 |
Target: 5'- uGCCAUaucaaACGGCGcgCGCGCCG-GCgUGc -3' miRNA: 3'- -UGGUAg----UGUUGUa-GCGCGGCaCGgAC- -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 42048 | 0.67 | 0.860642 |
Target: 5'- cGCCcgCGCuGCGuUCGCGCaCGUGCa-- -3' miRNA: 3'- -UGGuaGUGuUGU-AGCGCG-GCACGgac -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 23810 | 0.67 | 0.860642 |
Target: 5'- cGCUc-CGCGGCGUcgggCGCGCCGUGUCUc -3' miRNA: 3'- -UGGuaGUGUUGUA----GCGCGGCACGGAc -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 13899 | 0.67 | 0.860642 |
Target: 5'- aACCAaaCGCGGCggCGCGCaCGccgGCCUGc -3' miRNA: 3'- -UGGUa-GUGUUGuaGCGCG-GCa--CGGAC- -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 130913 | 0.67 | 0.852732 |
Target: 5'- aGCCguccgGUCACGGCAguggcggcgguUUGCGCCGUGUguUUGg -3' miRNA: 3'- -UGG-----UAGUGUUGU-----------AGCGCGGCACG--GAC- -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 125851 | 0.67 | 0.852732 |
Target: 5'- cCCAUU-CGGCA-CGCGCUGgGCCUGc -3' miRNA: 3'- uGGUAGuGUUGUaGCGCGGCaCGGAC- -5' |
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6967 | 3' | -55.2 | NC_001875.2 | + | 105249 | 0.67 | 0.852732 |
Target: 5'- aACCAgaaGCAACuggGCGCCGUGCa-- -3' miRNA: 3'- -UGGUag-UGUUGuagCGCGGCACGgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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