miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6967 5' -61.8 NC_001875.2 + 22944 0.66 0.644831
Target:  5'- gUUUGGACcGgGCGGCGCCauguaCGCCu- -3'
miRNA:   3'- aAGACCUGuCgCGCUGCGGc----GCGGcc -5'
6967 5' -61.8 NC_001875.2 + 48304 0.66 0.644831
Target:  5'- gUUUGcGACuGCGCGACGCCuuuuacaaGgGCCa- -3'
miRNA:   3'- aAGAC-CUGuCGCGCUGCGG--------CgCGGcc -5'
6967 5' -61.8 NC_001875.2 + 79310 0.66 0.643838
Target:  5'- -aCUGGcGCgugcuuucgaugAGCGCGGCGCUgccuuugGCGCCGc -3'
miRNA:   3'- aaGACC-UG------------UCGCGCUGCGG-------CGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 17484 0.66 0.634895
Target:  5'- --aUGGcCAGCaaguugGCgGACGCCGCGUCGu -3'
miRNA:   3'- aagACCuGUCG------CG-CUGCGGCGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 120271 0.66 0.634895
Target:  5'- cUUUGGgaacGCAGCGCGAUGaaGCGCg-- -3'
miRNA:   3'- aAGACC----UGUCGCGCUGCggCGCGgcc -5'
6967 5' -61.8 NC_001875.2 + 83019 0.66 0.634895
Target:  5'- -gCUGGACcGCGCGcaGCGagUGCGCCa- -3'
miRNA:   3'- aaGACCUGuCGCGC--UGCg-GCGCGGcc -5'
6967 5' -61.8 NC_001875.2 + 40388 0.66 0.634895
Target:  5'- --gUGGACAuGCGCGcccacGCGCCGcCGCUc- -3'
miRNA:   3'- aagACCUGU-CGCGC-----UGCGGC-GCGGcc -5'
6967 5' -61.8 NC_001875.2 + 54940 0.66 0.62595
Target:  5'- -gCUGGGCGccgccccuuugcgcGCGCGuuugccggacgcguCGCuCGCGCUGGg -3'
miRNA:   3'- aaGACCUGU--------------CGCGCu-------------GCG-GCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 81974 0.66 0.624957
Target:  5'- -cUUGGuuGGCGcCGGCaaGgCGCGCCGGc -3'
miRNA:   3'- aaGACCugUCGC-GCUG--CgGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 8245 0.66 0.624957
Target:  5'- uUUUUGGGCAGCcgGCGAaucuugUGCC-CGCCGu -3'
miRNA:   3'- -AAGACCUGUCG--CGCU------GCGGcGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 128002 0.66 0.624957
Target:  5'- -gUUGGA-GGCuGCG--GCCGCGCCGGc -3'
miRNA:   3'- aaGACCUgUCG-CGCugCGGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 36419 0.66 0.615024
Target:  5'- -gCUGGcCGGCGC--CGCgGUGUCGGg -3'
miRNA:   3'- aaGACCuGUCGCGcuGCGgCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 67878 0.66 0.615024
Target:  5'- aUUCUGGuuCAGCGCGgucgGCGacaGCGCCu- -3'
miRNA:   3'- -AAGACCu-GUCGCGC----UGCgg-CGCGGcc -5'
6967 5' -61.8 NC_001875.2 + 110739 0.66 0.615024
Target:  5'- ---gGGGCgcgugcaguuuaAGCGCGGCGaCCGcCGCCGc -3'
miRNA:   3'- aagaCCUG------------UCGCGCUGC-GGC-GCGGCc -5'
6967 5' -61.8 NC_001875.2 + 21690 0.66 0.615024
Target:  5'- ----nGACgAGCGCGACGCgGUGCUGcGg -3'
miRNA:   3'- aagacCUG-UCGCGCUGCGgCGCGGC-C- -5'
6967 5' -61.8 NC_001875.2 + 69230 0.66 0.615024
Target:  5'- aUUCggacacGGCGGCGuCGaACGgCGCGCUGGg -3'
miRNA:   3'- -AAGac----CUGUCGC-GC-UGCgGCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 83302 0.66 0.615024
Target:  5'- ---aGGuCAGCcguuaaauacccGCGGgGCgCGCGCCGGg -3'
miRNA:   3'- aagaCCuGUCG------------CGCUgCG-GCGCGGCC- -5'
6967 5' -61.8 NC_001875.2 + 69227 0.66 0.605103
Target:  5'- gUUC-GGGCGaCGCG-CGCUGUGCCGa -3'
miRNA:   3'- -AAGaCCUGUcGCGCuGCGGCGCGGCc -5'
6967 5' -61.8 NC_001875.2 + 73628 0.66 0.605103
Target:  5'- -gCUGcGGCGGCuGCGGCggcuGCUGCGgCGGc -3'
miRNA:   3'- aaGAC-CUGUCG-CGCUG----CGGCGCgGCC- -5'
6967 5' -61.8 NC_001875.2 + 73658 0.66 0.605103
Target:  5'- -gCUGcGGCGGCuGCGGCugcuGCUGCGgCGGc -3'
miRNA:   3'- aaGAC-CUGUCG-CGCUG----CGGCGCgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.