miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6979 3' -49.5 NC_001875.2 + 71499 0.66 0.994493
Target:  5'- aUUGUGCUuuuUCAAAGCGUugGg----- -3'
miRNA:   3'- aAACGCGA---AGUUUCGCGugCacaagu -5'
6979 3' -49.5 NC_001875.2 + 112440 0.66 0.994493
Target:  5'- gUUUGCGCccggCAAcaacuugacGGUGUACGUGUUgGg -3'
miRNA:   3'- -AAACGCGaa--GUU---------UCGCGUGCACAAgU- -5'
6979 3' -49.5 NC_001875.2 + 69602 0.66 0.994493
Target:  5'- --gGCGCUUUAcgcGGCGCGCGUc---- -3'
miRNA:   3'- aaaCGCGAAGUu--UCGCGUGCAcaagu -5'
6979 3' -49.5 NC_001875.2 + 49541 0.66 0.994493
Target:  5'- aUUGCGCgccgcgcCAGGGCGU-CGUGUUg- -3'
miRNA:   3'- aAACGCGaa-----GUUUCGCGuGCACAAgu -5'
6979 3' -49.5 NC_001875.2 + 96217 0.66 0.994493
Target:  5'- gUUUGCGCaaCAAA-CGCAaccuUGUGUUCAa -3'
miRNA:   3'- -AAACGCGaaGUUUcGCGU----GCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 97635 0.66 0.993577
Target:  5'- -gUGCGCagaAAAcGCGUuCGUGUUCAc -3'
miRNA:   3'- aaACGCGaagUUU-CGCGuGCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 46565 0.66 0.993577
Target:  5'- --cGCGCaaaccgugUUCGGGGCGCuCGUGUcCGc -3'
miRNA:   3'- aaaCGCG--------AAGUUUCGCGuGCACAaGU- -5'
6979 3' -49.5 NC_001875.2 + 42052 0.66 0.993577
Target:  5'- --cGCGCUgCGuucGCGCACGUGcaCGa -3'
miRNA:   3'- aaaCGCGAaGUuu-CGCGUGCACaaGU- -5'
6979 3' -49.5 NC_001875.2 + 57292 0.66 0.993577
Target:  5'- --aGCGCUcCAAcgcgaacgGGCGCGCGUcgUCGg -3'
miRNA:   3'- aaaCGCGAaGUU--------UCGCGUGCAcaAGU- -5'
6979 3' -49.5 NC_001875.2 + 90788 0.66 0.992543
Target:  5'- -cUGCGCcUCGAacgacaGGuCGUugGUGUUCc -3'
miRNA:   3'- aaACGCGaAGUU------UC-GCGugCACAAGu -5'
6979 3' -49.5 NC_001875.2 + 38274 0.66 0.992543
Target:  5'- --aGCGCcUCGcAGCGCGCGUa---- -3'
miRNA:   3'- aaaCGCGaAGUuUCGCGUGCAcaagu -5'
6979 3' -49.5 NC_001875.2 + 126956 0.66 0.992543
Target:  5'- -aUGCcgGCgaCAcGAGCGCACGUG-UCAu -3'
miRNA:   3'- aaACG--CGaaGU-UUCGCGUGCACaAGU- -5'
6979 3' -49.5 NC_001875.2 + 54104 0.66 0.992543
Target:  5'- -aUGCGCUgcc-AGCGCACGUa---- -3'
miRNA:   3'- aaACGCGAaguuUCGCGUGCAcaagu -5'
6979 3' -49.5 NC_001875.2 + 34740 0.66 0.992321
Target:  5'- --cGCGCaaaucgugguugUCAAGcCGUGCGUGUUCAa -3'
miRNA:   3'- aaaCGCGa-----------AGUUUcGCGUGCACAAGU- -5'
6979 3' -49.5 NC_001875.2 + 9979 0.66 0.99138
Target:  5'- --cGCGUguaCAGGGCGUACGUGc--- -3'
miRNA:   3'- aaaCGCGaa-GUUUCGCGUGCACaagu -5'
6979 3' -49.5 NC_001875.2 + 66057 0.66 0.99138
Target:  5'- --cGCGCgccgaCGccGCGCGCGUGcUCGc -3'
miRNA:   3'- aaaCGCGaa---GUuuCGCGUGCACaAGU- -5'
6979 3' -49.5 NC_001875.2 + 227 0.66 0.99138
Target:  5'- --cGCGCgccaUCAAAuuGCGCACGUuuUUCAg -3'
miRNA:   3'- aaaCGCGa---AGUUU--CGCGUGCAc-AAGU- -5'
6979 3' -49.5 NC_001875.2 + 125648 0.66 0.990079
Target:  5'- --cGCGCUUUGAaacGGCGCGCGgg--CAc -3'
miRNA:   3'- aaaCGCGAAGUU---UCGCGUGCacaaGU- -5'
6979 3' -49.5 NC_001875.2 + 44133 0.66 0.990079
Target:  5'- gUUUGCGUccgCGGAGCGCuuucCGUGUccgCAa -3'
miRNA:   3'- -AAACGCGaa-GUUUCGCGu---GCACAa--GU- -5'
6979 3' -49.5 NC_001875.2 + 123329 0.66 0.990079
Target:  5'- --cGCGCaggCAGAGCGCACGc----- -3'
miRNA:   3'- aaaCGCGaa-GUUUCGCGUGCacaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.