miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6982 3' -53.9 NC_001875.2 + 33508 0.66 0.945041
Target:  5'- uGCCgCAGCgCCAACAUgugCAcguugaacGGAUGCaaGCACg -3'
miRNA:   3'- -CGG-GUCG-GGUUGUA---GU--------UCUGCG--UGUG- -5'
6982 3' -53.9 NC_001875.2 + 40518 0.66 0.945041
Target:  5'- cGCCCA--CCAugGUCAAGAUuuugugccugaaGCGCAUc -3'
miRNA:   3'- -CGGGUcgGGUugUAGUUCUG------------CGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 15922 0.66 0.945041
Target:  5'- gGCaCCGGCaacaugacCCAGCuggCGGGGCGCcaGCACu -3'
miRNA:   3'- -CG-GGUCG--------GGUUGua-GUUCUGCG--UGUG- -5'
6982 3' -53.9 NC_001875.2 + 68835 0.66 0.945041
Target:  5'- uGCgCuGCCUGGCGgaCGGGuCGCACGCg -3'
miRNA:   3'- -CGgGuCGGGUUGUa-GUUCuGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 95180 0.66 0.945041
Target:  5'- cGCCCcgAGCUCAGCGcgCAcGACGCGg-- -3'
miRNA:   3'- -CGGG--UCGGGUUGUa-GUuCUGCGUgug -5'
6982 3' -53.9 NC_001875.2 + 119340 0.66 0.944582
Target:  5'- cGCCCuucgugaAGCUCAuucagcgcgacuACAUCuacGACGCGCAg -3'
miRNA:   3'- -CGGG-------UCGGGU------------UGUAGuu-CUGCGUGUg -5'
6982 3' -53.9 NC_001875.2 + 22857 0.66 0.943656
Target:  5'- cGUCCAGCCuggacaccgugcugCAgcGCAUCGcuauCGCACACg -3'
miRNA:   3'- -CGGGUCGG--------------GU--UGUAGUucu-GCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 77392 0.66 0.942249
Target:  5'- aGCCCAuGUCCAugGacgacauugaaaagCAGGgcaACGCGCGCg -3'
miRNA:   3'- -CGGGU-CGGGUugUa-------------GUUC---UGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 5298 0.66 0.940337
Target:  5'- uGCCCGcGCCCGACGaccacUCcau-UGCGCGCu -3'
miRNA:   3'- -CGGGU-CGGGUUGU-----AGuucuGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 128057 0.66 0.940337
Target:  5'- aGUCgGGCCCAACu---GGACgacauuGCGCGCg -3'
miRNA:   3'- -CGGgUCGGGUUGuaguUCUG------CGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 17742 0.66 0.940337
Target:  5'- uGUCCAGCCaAACGcCGuuuGCGUACACg -3'
miRNA:   3'- -CGGGUCGGgUUGUaGUuc-UGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 44133 0.66 0.940337
Target:  5'- uGCuCCAGCuUgGACAU-GAGGCaGCGCACg -3'
miRNA:   3'- -CG-GGUCG-GgUUGUAgUUCUG-CGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 124503 0.66 0.940337
Target:  5'- gGUuuGGCCgGGCAgCAGGuCGCugACg -3'
miRNA:   3'- -CGggUCGGgUUGUaGUUCuGCGugUG- -5'
6982 3' -53.9 NC_001875.2 + 19861 0.66 0.940337
Target:  5'- aCUCGGCC--GCGUCGcGGCGCGgGCg -3'
miRNA:   3'- cGGGUCGGguUGUAGUuCUGCGUgUG- -5'
6982 3' -53.9 NC_001875.2 + 17797 0.66 0.940337
Target:  5'- cGCgCAGCCCGcgugcuacCAUCuGGAC-CGCGCg -3'
miRNA:   3'- -CGgGUCGGGUu-------GUAGuUCUGcGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 98913 0.66 0.939852
Target:  5'- cGCCgUAGCUCGcggcgccgguugcGCGUgCGcGACGCGCGCg -3'
miRNA:   3'- -CGG-GUCGGGU-------------UGUA-GUuCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 89330 0.66 0.935379
Target:  5'- -aCgGGCCuCAGCuUUgcGGCGCACGCg -3'
miRNA:   3'- cgGgUCGG-GUUGuAGuuCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 73334 0.66 0.935379
Target:  5'- gGUCCGGCgCAAUuUCGAaACGCAgCGCg -3'
miRNA:   3'- -CGGGUCGgGUUGuAGUUcUGCGU-GUG- -5'
6982 3' -53.9 NC_001875.2 + 52007 0.66 0.935379
Target:  5'- -gCCAGCUgAGCAcgCAggugucGGACGUGCGCg -3'
miRNA:   3'- cgGGUCGGgUUGUa-GU------UCUGCGUGUG- -5'
6982 3' -53.9 NC_001875.2 + 12839 0.66 0.935379
Target:  5'- gGCCacgUAGUCgGGCAUCu-GGCGCGCAa -3'
miRNA:   3'- -CGG---GUCGGgUUGUAGuuCUGCGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.