miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6985 3' -56.2 NC_001875.2 + 67242 0.66 0.870872
Target:  5'- aACAgCGGCGU-GCCGuugcagaaggUGgcGCGCUUg -3'
miRNA:   3'- cUGUgGCCGCAuCGGU----------ACaaCGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 100142 0.66 0.870872
Target:  5'- uGCGCCGGCGgcGCgCAaGcgGCGgUCc -3'
miRNA:   3'- cUGUGGCCGCauCG-GUaCaaCGCgAG- -5'
6985 3' -56.2 NC_001875.2 + 7377 0.66 0.870872
Target:  5'- -cCGCCGGaucGGCCAcgcgGUUGCGCg- -3'
miRNA:   3'- cuGUGGCCgcaUCGGUa---CAACGCGag -5'
6985 3' -56.2 NC_001875.2 + 89356 0.66 0.863263
Target:  5'- gGACGaCGGCGUGcgcguGCgCGUGUUGCugcgugGCUCg -3'
miRNA:   3'- -CUGUgGCCGCAU-----CG-GUACAACG------CGAG- -5'
6985 3' -56.2 NC_001875.2 + 62412 0.66 0.863263
Target:  5'- aACGCCGGCGUcaAGCacuucgCGUGgaaaUUGCGCg- -3'
miRNA:   3'- cUGUGGCCGCA--UCG------GUAC----AACGCGag -5'
6985 3' -56.2 NC_001875.2 + 102044 0.66 0.863263
Target:  5'- -uCGCCGGCGUAGCC-UGacaCGCcCg -3'
miRNA:   3'- cuGUGGCCGCAUCGGuACaacGCGaG- -5'
6985 3' -56.2 NC_001875.2 + 454 0.66 0.855437
Target:  5'- uGCACCGGCGa----GUGUUcGCGCUUg -3'
miRNA:   3'- cUGUGGCCGCaucggUACAA-CGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 75607 0.66 0.855437
Target:  5'- cGCGCCGGCGUGuaCGaGUUuGCGUUUu -3'
miRNA:   3'- cUGUGGCCGCAUcgGUaCAA-CGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 88035 0.66 0.855437
Target:  5'- --aGCCGGCaaAGCCGUGccaaCGCUCa -3'
miRNA:   3'- cugUGGCCGcaUCGGUACaac-GCGAG- -5'
6985 3' -56.2 NC_001875.2 + 45534 0.66 0.847401
Target:  5'- uGCGCCgauuauuaagGGCGcAGCaCGUGUacgauuUGCGCUCc -3'
miRNA:   3'- cUGUGG----------CCGCaUCG-GUACA------ACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 119008 0.66 0.847401
Target:  5'- --aGCCGGCGccGCCggGuUUGUGUUCg -3'
miRNA:   3'- cugUGGCCGCauCGGuaC-AACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 7447 0.66 0.847401
Target:  5'- cGCGCCGGCGauugcGGCgGUGUacggccgauucUGCGC-Ca -3'
miRNA:   3'- cUGUGGCCGCa----UCGgUACA-----------ACGCGaG- -5'
6985 3' -56.2 NC_001875.2 + 95410 0.66 0.847401
Target:  5'- cGCGCCGGCGUcgcaaagguaaGGCCucgcgGCGCcCg -3'
miRNA:   3'- cUGUGGCCGCA-----------UCGGuacaaCGCGaG- -5'
6985 3' -56.2 NC_001875.2 + 25353 0.66 0.847401
Target:  5'- uACACCGGCGagcuguuuuucaaAGCCGUcaacGUuggcccggcgccgauUGCGCUCa -3'
miRNA:   3'- cUGUGGCCGCa------------UCGGUA----CA---------------ACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 70341 0.66 0.839161
Target:  5'- gGACugCGGCGccgAGCCGgc--GCGCa- -3'
miRNA:   3'- -CUGugGCCGCa--UCGGUacaaCGCGag -5'
6985 3' -56.2 NC_001875.2 + 94242 0.66 0.839161
Target:  5'- cACGCCGcCGUgcGGCCGgccgcgGCGCUCg -3'
miRNA:   3'- cUGUGGCcGCA--UCGGUacaa--CGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 125760 0.66 0.839161
Target:  5'- cGGCuauuaCGGCGacaacgaGGCCAUGcUGCGCUUu -3'
miRNA:   3'- -CUGug---GCCGCa------UCGGUACaACGCGAG- -5'
6985 3' -56.2 NC_001875.2 + 37093 0.66 0.839161
Target:  5'- cGACACCGccGCGUGGgUGUGcggGCGCg- -3'
miRNA:   3'- -CUGUGGC--CGCAUCgGUACaa-CGCGag -5'
6985 3' -56.2 NC_001875.2 + 59583 0.66 0.830727
Target:  5'- cGCugCaGCGUGGCCGacgUGCGCg- -3'
miRNA:   3'- cUGugGcCGCAUCGGUacaACGCGag -5'
6985 3' -56.2 NC_001875.2 + 103212 0.66 0.830727
Target:  5'- cGACACgGGCacgcugacGCCGgccUUGCGCUCa -3'
miRNA:   3'- -CUGUGgCCGcau-----CGGUac-AACGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.