miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6987 5' -55.9 NC_001875.2 + 90392 0.66 0.880659
Target:  5'- gCGCCgcaaccGGCGccuGUGCGCGCGCAGc -3'
miRNA:   3'- -GCGGaacaaaCUGC---CGCGCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 72359 0.66 0.880659
Target:  5'- aCGCgCUUGUcu--CGGcCGCGCuGCGCAAu -3'
miRNA:   3'- -GCG-GAACAaacuGCC-GCGCG-CGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 39225 0.66 0.880659
Target:  5'- uCGUCggGUUUucCGGCauucGCGCGCGCAu -3'
miRNA:   3'- -GCGGaaCAAAcuGCCG----CGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 14159 0.66 0.880659
Target:  5'- aGCCUUcagacacgUGAUGGgGcCGUGCGCAAa -3'
miRNA:   3'- gCGGAAcaa-----ACUGCCgC-GCGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 21338 0.66 0.880659
Target:  5'- cCGCCUUG-UUGACGagcaGCGCcGUGUGCu- -3'
miRNA:   3'- -GCGGAACaAACUGC----CGCG-CGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 70622 0.66 0.879936
Target:  5'- gGCCUgccccgaacauuUGUacGACGGCGCcgcguuuGCGUGCAAu -3'
miRNA:   3'- gCGGA------------ACAaaCUGCCGCG-------CGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 122202 0.66 0.878483
Target:  5'- uCGCgaaacacgcACGGCGCGCGCACGc -3'
miRNA:   3'- -GCGgaacaaac-UGCCGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 39655 0.66 0.873326
Target:  5'- gCGCgCgaGUUUGGgcCGGCG-GCGCGCGg -3'
miRNA:   3'- -GCG-GaaCAAACU--GCCGCgCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 83002 0.66 0.873326
Target:  5'- uCGCCggcggGcUUGaaGCGGCGCcguaGCGCGCGGa -3'
miRNA:   3'- -GCGGaa---CaAAC--UGCCGCG----CGCGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 85359 0.66 0.873326
Target:  5'- aCGCCg----UGGCGGCGUucGCGUugGCAAa -3'
miRNA:   3'- -GCGGaacaaACUGCCGCG--CGCG--UGUU- -5'
6987 5' -55.9 NC_001875.2 + 48039 0.66 0.868058
Target:  5'- cCGCCgcccacaggcacGAgGGCGCGCGCuACAAc -3'
miRNA:   3'- -GCGGaacaaa------CUgCCGCGCGCG-UGUU- -5'
6987 5' -55.9 NC_001875.2 + 68556 0.66 0.865767
Target:  5'- cCGCCgcGgc-GGCGGCGguCGCGCACc- -3'
miRNA:   3'- -GCGGaaCaaaCUGCCGC--GCGCGUGuu -5'
6987 5' -55.9 NC_001875.2 + 92516 0.66 0.865767
Target:  5'- gCGCCU------GCaGCGCGCGCACGc -3'
miRNA:   3'- -GCGGAacaaacUGcCGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 56305 0.66 0.865767
Target:  5'- gCGCCcaagcGUaUGGCGGUgGCGgGCACAu -3'
miRNA:   3'- -GCGGaa---CAaACUGCCG-CGCgCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 99781 0.66 0.865767
Target:  5'- gCGCCau-UUUG-CGGUacGCGCGCGCAc -3'
miRNA:   3'- -GCGGaacAAACuGCCG--CGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 2536 0.66 0.857988
Target:  5'- aCGCCgggccgGUgaacaACGGCGCGUcggGCGCAAa -3'
miRNA:   3'- -GCGGaa----CAaac--UGCCGCGCG---CGUGUU- -5'
6987 5' -55.9 NC_001875.2 + 128747 0.66 0.854816
Target:  5'- aGCCgcgccc--CGGCGCGUGCACGc -3'
miRNA:   3'- gCGGaacaaacuGCCGCGCGCGUGUu -5'
6987 5' -55.9 NC_001875.2 + 124963 0.66 0.849996
Target:  5'- aGCUcUGUUUGACcGCGuCGCcGCGCGu -3'
miRNA:   3'- gCGGaACAAACUGcCGC-GCG-CGUGUu -5'
6987 5' -55.9 NC_001875.2 + 20912 0.66 0.849996
Target:  5'- uCGCaUUGUUcgUGugGGCGCGC-CAUg- -3'
miRNA:   3'- -GCGgAACAA--ACugCCGCGCGcGUGuu -5'
6987 5' -55.9 NC_001875.2 + 85781 0.66 0.845101
Target:  5'- cCGUCggcGUUUGuuuuuguccauaagaACGGCGCGCGCGu-- -3'
miRNA:   3'- -GCGGaa-CAAAC---------------UGCCGCGCGCGUguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.