miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6988 3' -55.6 NC_001875.2 + 110006 0.66 0.864096
Target:  5'- -uGGCGuugACGCGCGCGcagcucgaccAGUGgCGCGAc -3'
miRNA:   3'- uuCCGU---UGCGCGUGC----------UCACgGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 86609 0.66 0.855316
Target:  5'- cAAGGCGACGCGCcgccuguucgcgcGCGAcGUGUacgccaGCGAu -3'
miRNA:   3'- -UUCCGUUGCGCG-------------UGCU-CACGg-----UGUUu -5'
6988 3' -55.6 NC_001875.2 + 46151 0.66 0.855316
Target:  5'- --cGCGGCGCGCAagcugguCGAGUcGCUGCAGg -3'
miRNA:   3'- uucCGUUGCGCGU-------GCUCA-CGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 127974 0.66 0.847934
Target:  5'- -uGGCGGCGCgGUGCugccGUGCCACAc- -3'
miRNA:   3'- uuCCGUUGCG-CGUGcu--CACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 31202 0.66 0.847934
Target:  5'- gGGGGCuGACGCGCACGcugcucauCCACGAGg -3'
miRNA:   3'- -UUCCG-UUGCGCGUGCucac----GGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 54372 0.66 0.845435
Target:  5'- uGGGCGA-GCGCACGccuuggucguaaacGGUGCCAa--- -3'
miRNA:   3'- uUCCGUUgCGCGUGC--------------UCACGGUguuu -5'
6988 3' -55.6 NC_001875.2 + 52543 0.66 0.839531
Target:  5'- --aGCAcgcgccaguauGCGCGCACGcGcGCCACAGAc -3'
miRNA:   3'- uucCGU-----------UGCGCGUGCuCaCGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 32786 0.66 0.839531
Target:  5'- --cGCGGCGUGgGCGGGcGCCGCGc- -3'
miRNA:   3'- uucCGUUGCGCgUGCUCaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 44540 0.66 0.839531
Target:  5'- --aGCAGCGuCGCGCGGcGUGCCGgGc- -3'
miRNA:   3'- uucCGUUGC-GCGUGCU-CACGGUgUuu -5'
6988 3' -55.6 NC_001875.2 + 39129 0.66 0.83697
Target:  5'- cGGGCAGCGCGCucaaguauaaaaacGCggcaGAGUGCaGCAAu -3'
miRNA:   3'- uUCCGUUGCGCG--------------UG----CUCACGgUGUUu -5'
6988 3' -55.6 NC_001875.2 + 23266 0.66 0.830924
Target:  5'- cGGGCAGCGCaGCGCcAGcaccGCCGCGc- -3'
miRNA:   3'- uUCCGUUGCG-CGUGcUCa---CGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 124747 0.66 0.830924
Target:  5'- -cGGCAGCGCGCGCugcaugucUGCgCACAGg -3'
miRNA:   3'- uuCCGUUGCGCGUGcuc-----ACG-GUGUUu -5'
6988 3' -55.6 NC_001875.2 + 100266 0.66 0.830924
Target:  5'- uGGGCGGCGCGCAaGGaaGCCGCc-- -3'
miRNA:   3'- uUCCGUUGCGCGUgCUcaCGGUGuuu -5'
6988 3' -55.6 NC_001875.2 + 27980 0.66 0.830924
Target:  5'- uAAGGaccaaGGCGCGCGCGAGaccGuUCACAAAa -3'
miRNA:   3'- -UUCCg----UUGCGCGUGCUCa--C-GGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 108751 0.66 0.822121
Target:  5'- cGGGGCAgcugcACGCgGCGCGGGUuGCCGg--- -3'
miRNA:   3'- -UUCCGU-----UGCG-CGUGCUCA-CGGUguuu -5'
6988 3' -55.6 NC_001875.2 + 121431 0.66 0.822121
Target:  5'- uGGGUA--GUGCAgCGGGUGCCGCGc- -3'
miRNA:   3'- uUCCGUugCGCGU-GCUCACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 68140 0.66 0.822121
Target:  5'- cGAGGCAaucACGCGCACcucGUGCgCGCc-- -3'
miRNA:   3'- -UUCCGU---UGCGCGUGcu-CACG-GUGuuu -5'
6988 3' -55.6 NC_001875.2 + 81344 0.67 0.81313
Target:  5'- --cGCGGCGCGCu--GGUGCCGCGc- -3'
miRNA:   3'- uucCGUUGCGCGugcUCACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 54942 0.67 0.81313
Target:  5'- uGGGCGccgccccuuuGCGCGCGCGuuUGCCGgAc- -3'
miRNA:   3'- uUCCGU----------UGCGCGUGCucACGGUgUuu -5'
6988 3' -55.6 NC_001875.2 + 7436 0.67 0.81313
Target:  5'- gAGGGCAacuGCGCGCcgGCGAuUGCgGCGGu -3'
miRNA:   3'- -UUCCGU---UGCGCG--UGCUcACGgUGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.