Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6988 | 3' | -55.6 | NC_001875.2 | + | 110006 | 0.66 | 0.864096 |
Target: 5'- -uGGCGuugACGCGCGCGcagcucgaccAGUGgCGCGAc -3' miRNA: 3'- uuCCGU---UGCGCGUGC----------UCACgGUGUUu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 86609 | 0.66 | 0.855316 |
Target: 5'- cAAGGCGACGCGCcgccuguucgcgcGCGAcGUGUacgccaGCGAu -3' miRNA: 3'- -UUCCGUUGCGCG-------------UGCU-CACGg-----UGUUu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 46151 | 0.66 | 0.855316 |
Target: 5'- --cGCGGCGCGCAagcugguCGAGUcGCUGCAGg -3' miRNA: 3'- uucCGUUGCGCGU-------GCUCA-CGGUGUUu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 127974 | 0.66 | 0.847934 |
Target: 5'- -uGGCGGCGCgGUGCugccGUGCCACAc- -3' miRNA: 3'- uuCCGUUGCG-CGUGcu--CACGGUGUuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 31202 | 0.66 | 0.847934 |
Target: 5'- gGGGGCuGACGCGCACGcugcucauCCACGAGg -3' miRNA: 3'- -UUCCG-UUGCGCGUGCucac----GGUGUUU- -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 54372 | 0.66 | 0.845435 |
Target: 5'- uGGGCGA-GCGCACGccuuggucguaaacGGUGCCAa--- -3' miRNA: 3'- uUCCGUUgCGCGUGC--------------UCACGGUguuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 52543 | 0.66 | 0.839531 |
Target: 5'- --aGCAcgcgccaguauGCGCGCACGcGcGCCACAGAc -3' miRNA: 3'- uucCGU-----------UGCGCGUGCuCaCGGUGUUU- -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 32786 | 0.66 | 0.839531 |
Target: 5'- --cGCGGCGUGgGCGGGcGCCGCGc- -3' miRNA: 3'- uucCGUUGCGCgUGCUCaCGGUGUuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 44540 | 0.66 | 0.839531 |
Target: 5'- --aGCAGCGuCGCGCGGcGUGCCGgGc- -3' miRNA: 3'- uucCGUUGC-GCGUGCU-CACGGUgUuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 39129 | 0.66 | 0.83697 |
Target: 5'- cGGGCAGCGCGCucaaguauaaaaacGCggcaGAGUGCaGCAAu -3' miRNA: 3'- uUCCGUUGCGCG--------------UG----CUCACGgUGUUu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 23266 | 0.66 | 0.830924 |
Target: 5'- cGGGCAGCGCaGCGCcAGcaccGCCGCGc- -3' miRNA: 3'- uUCCGUUGCG-CGUGcUCa---CGGUGUuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 124747 | 0.66 | 0.830924 |
Target: 5'- -cGGCAGCGCGCGCugcaugucUGCgCACAGg -3' miRNA: 3'- uuCCGUUGCGCGUGcuc-----ACG-GUGUUu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 100266 | 0.66 | 0.830924 |
Target: 5'- uGGGCGGCGCGCAaGGaaGCCGCc-- -3' miRNA: 3'- uUCCGUUGCGCGUgCUcaCGGUGuuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 27980 | 0.66 | 0.830924 |
Target: 5'- uAAGGaccaaGGCGCGCGCGAGaccGuUCACAAAa -3' miRNA: 3'- -UUCCg----UUGCGCGUGCUCa--C-GGUGUUU- -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 108751 | 0.66 | 0.822121 |
Target: 5'- cGGGGCAgcugcACGCgGCGCGGGUuGCCGg--- -3' miRNA: 3'- -UUCCGU-----UGCG-CGUGCUCA-CGGUguuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 121431 | 0.66 | 0.822121 |
Target: 5'- uGGGUA--GUGCAgCGGGUGCCGCGc- -3' miRNA: 3'- uUCCGUugCGCGU-GCUCACGGUGUuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 68140 | 0.66 | 0.822121 |
Target: 5'- cGAGGCAaucACGCGCACcucGUGCgCGCc-- -3' miRNA: 3'- -UUCCGU---UGCGCGUGcu-CACG-GUGuuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 81344 | 0.67 | 0.81313 |
Target: 5'- --cGCGGCGCGCu--GGUGCCGCGc- -3' miRNA: 3'- uucCGUUGCGCGugcUCACGGUGUuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 54942 | 0.67 | 0.81313 |
Target: 5'- uGGGCGccgccccuuuGCGCGCGCGuuUGCCGgAc- -3' miRNA: 3'- uUCCGU----------UGCGCGUGCucACGGUgUuu -5' |
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6988 | 3' | -55.6 | NC_001875.2 | + | 7436 | 0.67 | 0.81313 |
Target: 5'- gAGGGCAacuGCGCGCcgGCGAuUGCgGCGGu -3' miRNA: 3'- -UUCCGU---UGCGCG--UGCUcACGgUGUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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