miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6991 3' -45.5 NC_001875.2 + 100606 0.66 0.999981
Target:  5'- gGGCGcCGGCCGCGgccgcugUUUGccucguGGAUGa- -3'
miRNA:   3'- -CCGCuGUCGGCGCa------AAACu-----UUUAUag -5'
6991 3' -45.5 NC_001875.2 + 59042 0.66 0.999981
Target:  5'- gGGCGAaauuGCCGCGUUgc-AAAAcgcGUCg -3'
miRNA:   3'- -CCGCUgu--CGGCGCAAaacUUUUa--UAG- -5'
6991 3' -45.5 NC_001875.2 + 68565 0.66 0.999981
Target:  5'- cGGCGGCGGUCGCGcaccgcgUGGc------ -3'
miRNA:   3'- -CCGCUGUCGGCGCaaa----ACUuuuauag -5'
6991 3' -45.5 NC_001875.2 + 93971 0.66 0.999965
Target:  5'- uGGCG-CGGcCCGCcGUUUUGu-AAUGUUu -3'
miRNA:   3'- -CCGCuGUC-GGCG-CAAAACuuUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 43596 0.66 0.999965
Target:  5'- cGGCGGCAGCgGCGg------------ -3'
miRNA:   3'- -CCGCUGUCGgCGCaaaacuuuuauag -5'
6991 3' -45.5 NC_001875.2 + 25997 0.67 0.999943
Target:  5'- cGGCGgcucgcuggaccccaACAGCCGCGUc--GAGGAa--- -3'
miRNA:   3'- -CCGC---------------UGUCGGCGCAaaaCUUUUauag -5'
6991 3' -45.5 NC_001875.2 + 85824 0.67 0.999941
Target:  5'- cGGCGcCAGCUGCGUgggcggccgAUCc -3'
miRNA:   3'- -CCGCuGUCGGCGCAaaacuuuuaUAG- -5'
6991 3' -45.5 NC_001875.2 + 27224 0.67 0.999936
Target:  5'- cGGCGcacACGGCCGac----GAGGGUAUCa -3'
miRNA:   3'- -CCGC---UGUCGGCgcaaaaCUUUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 12847 0.67 0.999936
Target:  5'- cGGCGccggcuagcacGCAGCCGUGg-UUGGucGUGUUg -3'
miRNA:   3'- -CCGC-----------UGUCGGCGCaaAACUuuUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 118104 0.67 0.999914
Target:  5'- cGCGAC-GCCGCGcgaguggUGGAGAgcAUCa -3'
miRNA:   3'- cCGCUGuCGGCGCaaa----ACUUUUa-UAG- -5'
6991 3' -45.5 NC_001875.2 + 76733 0.67 0.999912
Target:  5'- cGGUGACgcggacgccgacgAGCCGaugaucuacUUUGAAAAUAUCa -3'
miRNA:   3'- -CCGCUG-------------UCGGCgca------AAACUUUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 91161 0.67 0.999887
Target:  5'- -uUGACGGUCGCGcaaUUGGacgGAAUGUCg -3'
miRNA:   3'- ccGCUGUCGGCGCaa-AACU---UUUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 33815 0.67 0.999887
Target:  5'- cGGCGcACGGCgCGCGggg-GAAAAa--- -3'
miRNA:   3'- -CCGC-UGUCG-GCGCaaaaCUUUUauag -5'
6991 3' -45.5 NC_001875.2 + 54151 0.67 0.999887
Target:  5'- cGGCGGCAGUCGCGc------------ -3'
miRNA:   3'- -CCGCUGUCGGCGCaaaacuuuuauag -5'
6991 3' -45.5 NC_001875.2 + 118688 0.67 0.999887
Target:  5'- cGGCGACGccuaCCGCGUg--Guc-GUGUCg -3'
miRNA:   3'- -CCGCUGUc---GGCGCAaaaCuuuUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 61591 0.67 0.999887
Target:  5'- cGGCGACGGCUcgggcgccggcgGCGcUUcgGGcuGUGUCg -3'
miRNA:   3'- -CCGCUGUCGG------------CGC-AAaaCUuuUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 48858 0.67 0.999887
Target:  5'- cGGCGACGagcggcGCCGCGag--GAAAacguaguguuGUGUCc -3'
miRNA:   3'- -CCGCUGU------CGGCGCaaaaCUUU----------UAUAG- -5'
6991 3' -45.5 NC_001875.2 + 79256 0.67 0.999851
Target:  5'- uGGUGGUGGCgCGCGUg--GAGacGAUGUCa -3'
miRNA:   3'- -CCGCUGUCG-GCGCAaaaCUU--UUAUAG- -5'
6991 3' -45.5 NC_001875.2 + 27722 0.67 0.999851
Target:  5'- aGGCGACGGgcaaCGCGU--UGcAAAUAUg -3'
miRNA:   3'- -CCGCUGUCg---GCGCAaaACuUUUAUAg -5'
6991 3' -45.5 NC_001875.2 + 118318 0.67 0.999851
Target:  5'- aGGCGGcCGGCCGCGcgcUGcAGGUGa- -3'
miRNA:   3'- -CCGCU-GUCGGCGCaaaACuUUUAUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.