miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6991 5' -54.3 NC_001875.2 + 77246 0.66 0.939951
Target:  5'- cCGAUACCGcGC-CGuGGGCGCGCc- -3'
miRNA:   3'- uGCUGUGGCaCGaGUuCUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 93338 0.66 0.939951
Target:  5'- uGCGACACCa-GCaccaccuugucgUCGGGAgugucgagcACGCGCUGc -3'
miRNA:   3'- -UGCUGUGGcaCG------------AGUUCU---------UGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 8482 0.66 0.939469
Target:  5'- cGCGuuuuuCACCG-GCUCAaaguagcaauuuaAGGGCGUGCg- -3'
miRNA:   3'- -UGCu----GUGGCaCGAGU-------------UCUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 65488 0.66 0.935017
Target:  5'- aGCGGC-CCGacaUGUUUGAGAACGCGg-- -3'
miRNA:   3'- -UGCUGuGGC---ACGAGUUCUUGCGCgac -5'
6991 5' -54.3 NC_001875.2 + 65759 0.66 0.935017
Target:  5'- aGCGACcugaGCCGgcgGCUgggCGAGcACGCGCg- -3'
miRNA:   3'- -UGCUG----UGGCa--CGA---GUUCuUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 91037 0.66 0.935017
Target:  5'- aACGACugUGUGgaUguGGugGUGCUGg -3'
miRNA:   3'- -UGCUGugGCACgaGuuCUugCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 125158 0.66 0.934511
Target:  5'- gGCGuGCGCCGUcgucgccaaGUUCAuuuaccgaguguaAGAGCGCGCg- -3'
miRNA:   3'- -UGC-UGUGGCA---------CGAGU-------------UCUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 58471 0.66 0.934511
Target:  5'- aACGaguuuuuGCGCUGUGUggccaaCGAGAcCGCGCUGc -3'
miRNA:   3'- -UGC-------UGUGGCACGa-----GUUCUuGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 19122 0.66 0.929835
Target:  5'- gACGAgGCCacGCUCGuGGGCcaaGCGCUGg -3'
miRNA:   3'- -UGCUgUGGcaCGAGUuCUUG---CGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 98943 0.66 0.929835
Target:  5'- cGCGACGCgcgCGUGUUCAGccguuuGCaGCGCUGc -3'
miRNA:   3'- -UGCUGUG---GCACGAGUUcu----UG-CGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 76050 0.66 0.924401
Target:  5'- gGCGACACCGa-CUCGAcGuuUGUGCUGc -3'
miRNA:   3'- -UGCUGUGGCacGAGUU-CuuGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 37355 0.66 0.924401
Target:  5'- cGCGGC-CgCGcGCUCGugcGAACGCGCg- -3'
miRNA:   3'- -UGCUGuG-GCaCGAGUu--CUUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 110179 0.66 0.924401
Target:  5'- gGCGucGCACUGcGCUCGuc--CGCGCUGg -3'
miRNA:   3'- -UGC--UGUGGCaCGAGUucuuGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 32132 0.66 0.923844
Target:  5'- uGCGAgCGCCGcauagcGCUCAacGGcggcgaaGACGCGCUGc -3'
miRNA:   3'- -UGCU-GUGGCa-----CGAGU--UC-------UUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 29550 0.66 0.922723
Target:  5'- uGCGGCgcGCCaauUGCUCGGGAgcucauucugcaacGCGCGCg- -3'
miRNA:   3'- -UGCUG--UGGc--ACGAGUUCU--------------UGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 31600 0.66 0.918718
Target:  5'- cCGGCGCCGUGC-CGugggcGGAccacAUGCGCg- -3'
miRNA:   3'- uGCUGUGGCACGaGU-----UCU----UGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 114748 0.67 0.915188
Target:  5'- aGCGACgACCGUGCuuuUCGGGucgaacgcucucgaaAGCGCGUg- -3'
miRNA:   3'- -UGCUG-UGGCACG---AGUUC---------------UUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 43108 0.67 0.912784
Target:  5'- aACGG-GCCGUGCUCGuuaaacucGGCGCGCa- -3'
miRNA:   3'- -UGCUgUGGCACGAGUuc------UUGCGCGac -5'
6991 5' -54.3 NC_001875.2 + 124913 0.67 0.912784
Target:  5'- cACGACGCguUGCUCAcGuACGUGUUGg -3'
miRNA:   3'- -UGCUGUGgcACGAGUuCuUGCGCGAC- -5'
6991 5' -54.3 NC_001875.2 + 10462 0.67 0.906603
Target:  5'- cGCGGCGgCGcGCUCAGuGAAUgGCGCUu -3'
miRNA:   3'- -UGCUGUgGCaCGAGUU-CUUG-CGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.