miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7000 5' -59.3 NC_001875.2 + 20950 0.66 0.768626
Target:  5'- ----cGcCCGCGGCCGUccagcgcaaACGCGUCgCAa -3'
miRNA:   3'- ccuuuC-GGCGCCGGCA---------UGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 103020 0.66 0.768626
Target:  5'- ----cGCUGCGGgCGUgaccACGUGCCCCGu -3'
miRNA:   3'- ccuuuCGGCGCCgGCA----UGUGCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 37973 0.66 0.768626
Target:  5'- ----cGCgGCGGCC-UGCGCGCUCa- -3'
miRNA:   3'- ccuuuCGgCGCCGGcAUGUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 91719 0.66 0.768626
Target:  5'- uGGAGgugacGGCCGuCGGCaaGUACAgCGCCagCCAg -3'
miRNA:   3'- -CCUU-----UCGGC-GCCGg-CAUGU-GCGG--GGU- -5'
7000 5' -59.3 NC_001875.2 + 12417 0.66 0.756487
Target:  5'- ----uGCCGCGcGCCaagcaggccguugcGUGCGCGCCgCGg -3'
miRNA:   3'- ccuuuCGGCGC-CGG--------------CAUGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 111798 0.66 0.749876
Target:  5'- cGGu--GCaCGCGGCCG-ACGgCGCCUg- -3'
miRNA:   3'- -CCuuuCG-GCGCCGGCaUGU-GCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 14221 0.66 0.749876
Target:  5'- ----cGCUGgGGCCGUGCgcaaaGCGCCUa- -3'
miRNA:   3'- ccuuuCGGCgCCGGCAUG-----UGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 16075 0.66 0.749876
Target:  5'- aGGAcGGCuCGCGGCgGUuugaaAUGCGCUgCAa -3'
miRNA:   3'- -CCUuUCG-GCGCCGgCA-----UGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 130102 0.66 0.747027
Target:  5'- cGGAAauGGCgGCGGCggcggcgcgaccggUGU-CGCGCCCgCAg -3'
miRNA:   3'- -CCUU--UCGgCGCCG--------------GCAuGUGCGGG-GU- -5'
7000 5' -59.3 NC_001875.2 + 68703 0.66 0.740346
Target:  5'- uGGAc--CCGUGcGCCGgccGCGCGCCCg- -3'
miRNA:   3'- -CCUuucGGCGC-CGGCa--UGUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 42988 0.66 0.740346
Target:  5'- -aAAGGCgGCGGCCGuUGCGaaggugGCCuCCAu -3'
miRNA:   3'- ccUUUCGgCGCCGGC-AUGUg-----CGG-GGU- -5'
7000 5' -59.3 NC_001875.2 + 2302 0.66 0.740346
Target:  5'- ----cGCCGUGGCCGcGCGCaGCUCg- -3'
miRNA:   3'- ccuuuCGGCGCCGGCaUGUG-CGGGgu -5'
7000 5' -59.3 NC_001875.2 + 78643 0.66 0.730726
Target:  5'- gGGAAcAGCuCGUcgaGGCCGUGCaaGCGUCCa- -3'
miRNA:   3'- -CCUU-UCG-GCG---CCGGCAUG--UGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 110582 0.66 0.730726
Target:  5'- ---uAGCCGC-GCCGcGCGCGCgCCu -3'
miRNA:   3'- ccuuUCGGCGcCGGCaUGUGCGgGGu -5'
7000 5' -59.3 NC_001875.2 + 82950 0.66 0.730726
Target:  5'- cGGucGUCGCGGCgG-GCGCGUCCUc -3'
miRNA:   3'- cCUuuCGGCGCCGgCaUGUGCGGGGu -5'
7000 5' -59.3 NC_001875.2 + 18241 0.66 0.721022
Target:  5'- cGGcccGCCGCcgacucgaacGCCGUGCugGCCCa- -3'
miRNA:   3'- -CCuuuCGGCGc---------CGGCAUGugCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 86239 0.67 0.711246
Target:  5'- uGGAGuGCUGCGcGCCGgaguCGgGCCCg- -3'
miRNA:   3'- -CCUUuCGGCGC-CGGCau--GUgCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 129520 0.67 0.711246
Target:  5'- -aGGAGCUGCaGGCCGaGCugGCCg-- -3'
miRNA:   3'- ccUUUCGGCG-CCGGCaUGugCGGggu -5'
7000 5' -59.3 NC_001875.2 + 4761 0.67 0.7083
Target:  5'- uGGAAugcuggccgccguuGGCCGCGGCUuugACuauuacagccgGCGCCCUg -3'
miRNA:   3'- -CCUU--------------UCGGCGCCGGca-UG-----------UGCGGGGu -5'
7000 5' -59.3 NC_001875.2 + 65982 0.67 0.701404
Target:  5'- --uGGGCCGCGGUcuugugauCGUACGCGCUg-- -3'
miRNA:   3'- ccuUUCGGCGCCG--------GCAUGUGCGGggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.