miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7003 5' -49.7 NC_001875.2 + 73011 0.66 0.996103
Target:  5'- ----aGUGACGGUGCGC-AACgCGCGc -3'
miRNA:   3'- uaauaCGCUGUUACGCGcUUG-GUGCc -5'
7003 5' -49.7 NC_001875.2 + 105588 0.66 0.996103
Target:  5'- -aUGUGCGGCAAggacgagGCGUacGCCGCc- -3'
miRNA:   3'- uaAUACGCUGUUa------CGCGcuUGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 85237 0.66 0.996103
Target:  5'- --cAUGuCGACGA-GCGCGGguuCCGCGc -3'
miRNA:   3'- uaaUAC-GCUGUUaCGCGCUu--GGUGCc -5'
7003 5' -49.7 NC_001875.2 + 79126 0.66 0.996103
Target:  5'- -gUcgGCGGCGGgcgcCGCGGcgggcucguuuGCCACGGc -3'
miRNA:   3'- uaAuaCGCUGUUac--GCGCU-----------UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 41827 0.66 0.995975
Target:  5'- ----cGCGGCcaguUGCGCGuccaguugccgcGCCGCGGc -3'
miRNA:   3'- uaauaCGCUGuu--ACGCGCu-----------UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 48306 0.66 0.995909
Target:  5'- ---uUGCGAC--UGCGCGAcgccuuuuacaaggGCCAUGu -3'
miRNA:   3'- uaauACGCUGuuACGCGCU--------------UGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 113134 0.66 0.995707
Target:  5'- uGUUGUGCGGCAcguuaAUgugcacgccggcgcGCGCGccguuugauauggcAACCAUGGg -3'
miRNA:   3'- -UAAUACGCUGU-----UA--------------CGCGC--------------UUGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 101652 0.66 0.995424
Target:  5'- ----cGCGGCGAacgGCGCcaAAUCACGGc -3'
miRNA:   3'- uaauaCGCUGUUa--CGCGc-UUGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 81832 0.66 0.995424
Target:  5'- ----gGCGACAc-GCGCGccccAACCGCGa -3'
miRNA:   3'- uaauaCGCUGUuaCGCGC----UUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 77391 0.66 0.995424
Target:  5'- -cUGUGCGGCGccGCGgcuaaCGAccGCCACGc -3'
miRNA:   3'- uaAUACGCUGUuaCGC-----GCU--UGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 103923 0.66 0.995424
Target:  5'- ---uUGCGACcGUGUaaacGCGGGCUGCGa -3'
miRNA:   3'- uaauACGCUGuUACG----CGCUUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 122135 0.66 0.995203
Target:  5'- ----cGCGGCGcgGCcggcgcgcacgacgGCGAGCCccaACGGa -3'
miRNA:   3'- uaauaCGCUGUuaCG--------------CGCUUGG---UGCC- -5'
7003 5' -49.7 NC_001875.2 + 43597 0.66 0.994652
Target:  5'- ----gGCGGCAGcggcgGCGCGcGCCGCu- -3'
miRNA:   3'- uaauaCGCUGUUa----CGCGCuUGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 96014 0.66 0.994652
Target:  5'- --aGUGCGACAGcgagauugGgGUGGACUACGu -3'
miRNA:   3'- uaaUACGCUGUUa-------CgCGCUUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 113684 0.66 0.994652
Target:  5'- ----gGCGGCGucGCGCGcGCCGCa- -3'
miRNA:   3'- uaauaCGCUGUuaCGCGCuUGGUGcc -5'
7003 5' -49.7 NC_001875.2 + 21676 0.66 0.994652
Target:  5'- --aGUGCGACGccgcccgacGaGCGCGAcgcgguGCUGCGGu -3'
miRNA:   3'- uaaUACGCUGU---------UaCGCGCU------UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 6916 0.66 0.994652
Target:  5'- --cGUGCGcucggcCGAggGCGUGGACCGCGc -3'
miRNA:   3'- uaaUACGCu-----GUUa-CGCGCUUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 43885 0.66 0.994652
Target:  5'- ----aGCGcCAuGUGCGgGAugUACGGg -3'
miRNA:   3'- uaauaCGCuGU-UACGCgCUugGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 77099 0.66 0.994652
Target:  5'- --gGUGcCGGCGGUGCGCccg-CACGGc -3'
miRNA:   3'- uaaUAC-GCUGUUACGCGcuugGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 46514 0.66 0.994652
Target:  5'- ----cGCGGCGGgcgGgGCGAGagcgcCCGCGGc -3'
miRNA:   3'- uaauaCGCUGUUa--CgCGCUU-----GGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.