miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7008 3' -50.2 NC_001875.2 + 31074 0.66 0.990124
Target:  5'- cCGGauuuuuGGGCGUACGUGUcgCGCAAu -3'
miRNA:   3'- -GUCgauu--UUCGCGUGCGCAaaGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 59106 0.66 0.990124
Target:  5'- aGGCUGAcGGCGUcgcuggccgACGCGcaagCGCAAu -3'
miRNA:   3'- gUCGAUUuUCGCG---------UGCGCaaa-GCGUU- -5'
7008 3' -50.2 NC_001875.2 + 41709 0.66 0.990124
Target:  5'- gGGCguaugcgcGGCGCuGCGCGgcgUCGCAu -3'
miRNA:   3'- gUCGauuu----UCGCG-UGCGCaa-AGCGUu -5'
7008 3' -50.2 NC_001875.2 + 41461 0.66 0.988686
Target:  5'- cCGGUUGc-GGCGCGCGCGg--CGUg- -3'
miRNA:   3'- -GUCGAUuuUCGCGUGCGCaaaGCGuu -5'
7008 3' -50.2 NC_001875.2 + 72560 0.66 0.988686
Target:  5'- -cGCUGcgGGCGCggGCGCGgg-CGCu- -3'
miRNA:   3'- guCGAUuuUCGCG--UGCGCaaaGCGuu -5'
7008 3' -50.2 NC_001875.2 + 93788 0.66 0.988686
Target:  5'- aCGGCgcaAGucGCGCGgGCGUucgUUUGCAAu -3'
miRNA:   3'- -GUCGa--UUuuCGCGUgCGCA---AAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 71132 0.66 0.988534
Target:  5'- uGGCUGGGcggccucAGCGCGgcCGCGUUggGCAu -3'
miRNA:   3'- gUCGAUUU-------UCGCGU--GCGCAAagCGUu -5'
7008 3' -50.2 NC_001875.2 + 22207 0.66 0.987091
Target:  5'- -cGCguuGGGCa-GCGCGUUUCGCAu -3'
miRNA:   3'- guCGauuUUCGcgUGCGCAAAGCGUu -5'
7008 3' -50.2 NC_001875.2 + 67939 0.66 0.987091
Target:  5'- uGGCcAAAucaacuaccuuGCGCGCGCuUUUCGCAAc -3'
miRNA:   3'- gUCGaUUUu----------CGCGUGCGcAAAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 100072 0.66 0.987091
Target:  5'- -uGCUGcuGGgGCACGCGcUUgGCAc -3'
miRNA:   3'- guCGAUuuUCgCGUGCGCaAAgCGUu -5'
7008 3' -50.2 NC_001875.2 + 31821 0.66 0.987091
Target:  5'- gCGGC---AAGCGC-CGCGUUUgCGCu- -3'
miRNA:   3'- -GUCGauuUUCGCGuGCGCAAA-GCGuu -5'
7008 3' -50.2 NC_001875.2 + 44137 0.66 0.986752
Target:  5'- cCAGCUuggacauGAGgcAGCGCACGuCGUcgcucuccucgauUUCGCAc -3'
miRNA:   3'- -GUCGA-------UUU--UCGCGUGC-GCA-------------AAGCGUu -5'
7008 3' -50.2 NC_001875.2 + 29796 0.66 0.985328
Target:  5'- gGGaCUGugcGGGCGCugGCGg--CGCAu -3'
miRNA:   3'- gUC-GAUu--UUCGCGugCGCaaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 131527 0.66 0.985328
Target:  5'- gCGGCUGGAAGCG-GCGCaaagCGCGc -3'
miRNA:   3'- -GUCGAUUUUCGCgUGCGcaaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 73889 0.66 0.985328
Target:  5'- aCGGCggucc-CGCAcgacCGCGUUUCGCGAc -3'
miRNA:   3'- -GUCGauuuucGCGU----GCGCAAAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 80115 0.66 0.985328
Target:  5'- aUAGUUGAAGGCcCAUGgGUcgUCGCAc -3'
miRNA:   3'- -GUCGAUUUUCGcGUGCgCAa-AGCGUu -5'
7008 3' -50.2 NC_001875.2 + 21395 0.66 0.983387
Target:  5'- cCAGCUccAAGCGCAuuugguccacCGUGgugUCGCGGu -3'
miRNA:   3'- -GUCGAuuUUCGCGU----------GCGCaa-AGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 99990 0.66 0.983387
Target:  5'- gAGCg--GAGCGCuguuaGCGCGgugcuggUCGCAAa -3'
miRNA:   3'- gUCGauuUUCGCG-----UGCGCaa-----AGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 54373 0.66 0.983387
Target:  5'- gGGC---GAGCGCACGCcuuggUCGUAAa -3'
miRNA:   3'- gUCGauuUUCGCGUGCGcaa--AGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 108999 0.67 0.981258
Target:  5'- aGGCUGGAcGCGUACGuCGUgcCGCc- -3'
miRNA:   3'- gUCGAUUUuCGCGUGC-GCAaaGCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.