miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7009 5' -56.8 NC_001875.2 + 81414 0.66 0.834851
Target:  5'- uUGCuGACGUGuUCCAgCAGCcUGCGc-- -3'
miRNA:   3'- -ACG-CUGCAC-GGGUgGUCGuACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 15103 0.66 0.834851
Target:  5'- gGCGGgGUuuuUCUACCAGUAUGUGUUUc -3'
miRNA:   3'- aCGCUgCAc--GGGUGGUCGUACGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 88994 0.66 0.834851
Target:  5'- cUGCGGCGcgccggauuUGCgCGCUAcGCGUGCGa-- -3'
miRNA:   3'- -ACGCUGC---------ACGgGUGGU-CGUACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 98462 0.66 0.829743
Target:  5'- gGCGACGagacgGCCUgcuucuuuugcgacuGCC-GCGUGCGUg- -3'
miRNA:   3'- aCGCUGCa----CGGG---------------UGGuCGUACGCAaa -5'
7009 5' -56.8 NC_001875.2 + 87457 0.66 0.8263
Target:  5'- cGcCGACGUGCCCaaaauuguguACCGGCuaaaGCGc-- -3'
miRNA:   3'- aC-GCUGCACGGG----------UGGUCGua--CGCaaa -5'
7009 5' -56.8 NC_001875.2 + 119553 0.66 0.8263
Target:  5'- gGCGGCGUGCCgGCUgcacacgguGGCcUGCa--- -3'
miRNA:   3'- aCGCUGCACGGgUGG---------UCGuACGcaaa -5'
7009 5' -56.8 NC_001875.2 + 7069 0.66 0.8263
Target:  5'- cUGCGGCGacgCCACCGGCcuGUGCGc-- -3'
miRNA:   3'- -ACGCUGCacgGGUGGUCG--UACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 14412 0.66 0.817564
Target:  5'- aGCGuAUGgGCgCCACCGGCAUGgGc-- -3'
miRNA:   3'- aCGC-UGCaCG-GGUGGUCGUACgCaaa -5'
7009 5' -56.8 NC_001875.2 + 74155 0.66 0.817564
Target:  5'- cGCGGCGcccGCcgCCGCCAGCuuggacGCGUUUu -3'
miRNA:   3'- aCGCUGCa--CG--GGUGGUCGua----CGCAAA- -5'
7009 5' -56.8 NC_001875.2 + 129304 0.66 0.817564
Target:  5'- cGCGcCGuUGUUCACCGGCccgGCGUa- -3'
miRNA:   3'- aCGCuGC-ACGGGUGGUCGua-CGCAaa -5'
7009 5' -56.8 NC_001875.2 + 102978 0.66 0.817564
Target:  5'- gUGCuuUGUGCCCugCgggcacgugguGGCGUGCGg-- -3'
miRNA:   3'- -ACGcuGCACGGGugG-----------UCGUACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 39325 0.66 0.808653
Target:  5'- gGCGGCGUGCgCGCgCuGCAgGCGc-- -3'
miRNA:   3'- aCGCUGCACGgGUG-GuCGUaCGCaaa -5'
7009 5' -56.8 NC_001875.2 + 21020 0.66 0.808653
Target:  5'- cGCGGCGcaccagcgcGUCCACCuGCGcgGCGUUg -3'
miRNA:   3'- aCGCUGCa--------CGGGUGGuCGUa-CGCAAa -5'
7009 5' -56.8 NC_001875.2 + 121988 0.66 0.799574
Target:  5'- gGCGggcACGuUGCCCGCCAGCGaaaugaGCGc-- -3'
miRNA:   3'- aCGC---UGC-ACGGGUGGUCGUa-----CGCaaa -5'
7009 5' -56.8 NC_001875.2 + 33039 0.66 0.799574
Target:  5'- cGCGGCGggcGCCgCGCCGcGCGgauaGCGUUc -3'
miRNA:   3'- aCGCUGCa--CGG-GUGGU-CGUa---CGCAAa -5'
7009 5' -56.8 NC_001875.2 + 41475 0.66 0.799574
Target:  5'- cGCGGCGUGUCUuguguggucugcGCCGGCcgGuCGg-- -3'
miRNA:   3'- aCGCUGCACGGG------------UGGUCGuaC-GCaaa -5'
7009 5' -56.8 NC_001875.2 + 131547 0.66 0.790337
Target:  5'- gGaCGAgGUGCuggaCCugGCCAGCAUGCGg-- -3'
miRNA:   3'- aC-GCUgCACG----GG--UGGUCGUACGCaaa -5'
7009 5' -56.8 NC_001875.2 + 102994 0.66 0.790337
Target:  5'- gGCGACaaGUGCCCGCC-GUccGUGUc- -3'
miRNA:   3'- aCGCUG--CACGGGUGGuCGuaCGCAaa -5'
7009 5' -56.8 NC_001875.2 + 113684 0.66 0.789405
Target:  5'- gGCGGCGUcgcgcgcGCCgCACCAGUAacucacagugGCGUUg -3'
miRNA:   3'- aCGCUGCA-------CGG-GUGGUCGUa---------CGCAAa -5'
7009 5' -56.8 NC_001875.2 + 26322 0.67 0.771426
Target:  5'- cGCGACGaGCCguguCGCCAaGCAgUGUGUUUa -3'
miRNA:   3'- aCGCUGCaCGG----GUGGU-CGU-ACGCAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.