miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7011 5' -60 NC_001875.2 + 45230 0.66 0.74611
Target:  5'- cGCgCGAAcaGGCGGCGcGU-CGCCUUGu -3'
miRNA:   3'- -CGgGCUUcgCCGCCGU-CAuGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 126706 0.66 0.745163
Target:  5'- aCCCGAAGCGGCGcacguccGCGG-ACGugaCCUUu -3'
miRNA:   3'- cGGGCUUCGCCGC-------CGUCaUGC---GGAGc -5'
7011 5' -60 NC_001875.2 + 73608 0.66 0.736602
Target:  5'- cGCCaacuGuuGCGGCGGCGGcUGCGgCggcugCGg -3'
miRNA:   3'- -CGGg---CuuCGCCGCCGUC-AUGCgGa----GC- -5'
7011 5' -60 NC_001875.2 + 76510 0.66 0.736602
Target:  5'- cCCCGAAGCGGCGcGuCAucaccGUcgcGCGCCa-- -3'
miRNA:   3'- cGGGCUUCGCCGC-C-GU-----CA---UGCGGagc -5'
7011 5' -60 NC_001875.2 + 63716 0.66 0.727009
Target:  5'- uGUCgGucGCGGCgacGGCGG-GCGCUUCGc -3'
miRNA:   3'- -CGGgCuuCGCCG---CCGUCaUGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 21078 0.66 0.727009
Target:  5'- gGCaaaaGAcgcGCGGCGGCGGU-CGCCgCGc -3'
miRNA:   3'- -CGgg--CUu--CGCCGCCGUCAuGCGGaGC- -5'
7011 5' -60 NC_001875.2 + 127965 0.66 0.717336
Target:  5'- uGCCCagcuuGGCGGC-GCGGUGCuGCCg-- -3'
miRNA:   3'- -CGGGcu---UCGCCGcCGUCAUG-CGGagc -5'
7011 5' -60 NC_001875.2 + 43583 0.66 0.716365
Target:  5'- cGUCUGAcgaguacggcggcAGCGGCGGCGc-GCGCCg-- -3'
miRNA:   3'- -CGGGCU-------------UCGCCGCCGUcaUGCGGagc -5'
7011 5' -60 NC_001875.2 + 102912 0.66 0.713448
Target:  5'- gGCCguUGAAGCGGagguggcggaugacCGGCuGUGCaagauuuGCCUCGg -3'
miRNA:   3'- -CGG--GCUUCGCC--------------GCCGuCAUG-------CGGAGC- -5'
7011 5' -60 NC_001875.2 + 49361 0.66 0.706617
Target:  5'- gGCCgUGGugcaacauGCGGCGGCGGUACcguuccuGCCgccgCGa -3'
miRNA:   3'- -CGG-GCUu-------CGCCGCCGUCAUG-------CGGa---GC- -5'
7011 5' -60 NC_001875.2 + 110813 0.66 0.697792
Target:  5'- cGCCgCGcAGGUGGaCGcGCuGGUGCGCCgCGg -3'
miRNA:   3'- -CGG-GC-UUCGCC-GC-CG-UCAUGCGGaGC- -5'
7011 5' -60 NC_001875.2 + 52072 0.66 0.697792
Target:  5'- uGCCCGAAGCGGUGuu--UGCGCacaugCUCGc -3'
miRNA:   3'- -CGGGCUUCGCCGCcgucAUGCG-----GAGC- -5'
7011 5' -60 NC_001875.2 + 100144 0.66 0.697792
Target:  5'- cGCCgGcGGCGcgcaaGCGGCGGUccACGCCg-- -3'
miRNA:   3'- -CGGgCuUCGC-----CGCCGUCA--UGCGGagc -5'
7011 5' -60 NC_001875.2 + 110514 0.67 0.687936
Target:  5'- cGCCC-AGGUGGCcGCGGgccaccugGCGCUUCu -3'
miRNA:   3'- -CGGGcUUCGCCGcCGUCa-------UGCGGAGc -5'
7011 5' -60 NC_001875.2 + 65771 0.67 0.687936
Target:  5'- uGCgCGGcgGGCGGCGGCGcGUcgucguugaGCGCCa-- -3'
miRNA:   3'- -CGgGCU--UCGCCGCCGU-CA---------UGCGGagc -5'
7011 5' -60 NC_001875.2 + 49663 0.67 0.687936
Target:  5'- uGCCCGcGGCGGuUGcGCAcGUAcCGCCcgUCGg -3'
miRNA:   3'- -CGGGCuUCGCC-GC-CGU-CAU-GCGG--AGC- -5'
7011 5' -60 NC_001875.2 + 9729 0.67 0.687936
Target:  5'- cGCCCGAAGC-GUGGCAcGUGuugagcguccacCGCCguucCGa -3'
miRNA:   3'- -CGGGCUUCGcCGCCGU-CAU------------GCGGa---GC- -5'
7011 5' -60 NC_001875.2 + 131529 0.67 0.687936
Target:  5'- gGCUgGAAGCGGCGcaaAGcGCGCC-CGu -3'
miRNA:   3'- -CGGgCUUCGCCGCcg-UCaUGCGGaGC- -5'
7011 5' -60 NC_001875.2 + 84442 0.67 0.686948
Target:  5'- aUCgGGAGCGGCGGCGGcgguagaccaugaUGCGCgUg- -3'
miRNA:   3'- cGGgCUUCGCCGCCGUC-------------AUGCGgAgc -5'
7011 5' -60 NC_001875.2 + 22824 0.67 0.678037
Target:  5'- gGUCCGAcGGCaccgucGGCGGCAcgacGUACGCgUCc -3'
miRNA:   3'- -CGGGCU-UCG------CCGCCGU----CAUGCGgAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.