miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 3' -52.6 NC_001875.2 + 100583 0.66 0.96173
Target:  5'- cUGCGuCGACGCGuACGcGGGCCGGg- -3'
miRNA:   3'- aAUGUcGCUGUGU-UGUaCUCGGCCag -5'
7020 3' -52.6 NC_001875.2 + 39644 0.66 0.96173
Target:  5'- -cGCAGCGaaccgcGCGCGAguuUGGGCCGG-Cg -3'
miRNA:   3'- aaUGUCGC------UGUGUUgu-ACUCGGCCaG- -5'
7020 3' -52.6 NC_001875.2 + 3165 0.66 0.96173
Target:  5'- ---gGGCGGCGaguAgGUGAGCCGG-Cg -3'
miRNA:   3'- aaugUCGCUGUgu-UgUACUCGGCCaG- -5'
7020 3' -52.6 NC_001875.2 + 57931 0.66 0.96173
Target:  5'- ---gAGCGACGCAAUGUGucGCgaaacgCGGUCg -3'
miRNA:   3'- aaugUCGCUGUGUUGUACu-CG------GCCAG- -5'
7020 3' -52.6 NC_001875.2 + 36611 0.66 0.959494
Target:  5'- --uUAGCGcucacguaaauaagaGCGCAACAUGGcuacGCCGGUg -3'
miRNA:   3'- aauGUCGC---------------UGUGUUGUACU----CGGCCAg -5'
7020 3' -52.6 NC_001875.2 + 17693 0.66 0.957955
Target:  5'- -cGCGGCuGCgACAGCAUGAGCUGc-- -3'
miRNA:   3'- aaUGUCGcUG-UGUUGUACUCGGCcag -5'
7020 3' -52.6 NC_001875.2 + 128010 0.66 0.953933
Target:  5'- cUGCGGCcGCGcCGGCGUGcgccgacgacGGCCGGUg -3'
miRNA:   3'- aAUGUCGcUGU-GUUGUAC----------UCGGCCAg -5'
7020 3' -52.6 NC_001875.2 + 124246 0.66 0.953517
Target:  5'- -gGCGGCGGCACA--AUGAcgacaggcggcgcGuuGGUCg -3'
miRNA:   3'- aaUGUCGCUGUGUugUACU-------------CggCCAG- -5'
7020 3' -52.6 NC_001875.2 + 120740 0.66 0.949659
Target:  5'- -aGCuGCGGCGCcgaGACG-GGGCCGuGUCc -3'
miRNA:   3'- aaUGuCGCUGUG---UUGUaCUCGGC-CAG- -5'
7020 3' -52.6 NC_001875.2 + 94472 0.66 0.949218
Target:  5'- cUGCAGCGGCGCGcgcguucGCAcGAGCgcgCGGcCg -3'
miRNA:   3'- aAUGUCGCUGUGU-------UGUaCUCG---GCCaG- -5'
7020 3' -52.6 NC_001875.2 + 1050 0.66 0.944662
Target:  5'- -cACAGCGuuggGCGCAACGUuGGCgaccgcgCGGUCa -3'
miRNA:   3'- aaUGUCGC----UGUGUUGUAcUCG-------GCCAG- -5'
7020 3' -52.6 NC_001875.2 + 12294 0.67 0.94034
Target:  5'- gUGCAGcCGGCACGccgcCGUGuGCgUGGUCa -3'
miRNA:   3'- aAUGUC-GCUGUGUu---GUACuCG-GCCAG- -5'
7020 3' -52.6 NC_001875.2 + 111824 0.67 0.94034
Target:  5'- cUGCuccGCGugACGGCugcgcGAGCCGGcCa -3'
miRNA:   3'- aAUGu--CGCugUGUUGua---CUCGGCCaG- -5'
7020 3' -52.6 NC_001875.2 + 90728 0.67 0.94034
Target:  5'- -aGC-GCGACACGACGUGcGaCGGUg -3'
miRNA:   3'- aaUGuCGCUGUGUUGUACuCgGCCAg -5'
7020 3' -52.6 NC_001875.2 + 92752 0.67 0.94034
Target:  5'- cUGCAGCGuugGCACAGCAcGAcGCCGcGg- -3'
miRNA:   3'- aAUGUCGC---UGUGUUGUaCU-CGGC-Cag -5'
7020 3' -52.6 NC_001875.2 + 130115 0.67 0.935289
Target:  5'- -gGCGGCGGCGCGACcgGuGUCGcGcCc -3'
miRNA:   3'- aaUGUCGCUGUGUUGuaCuCGGC-CaG- -5'
7020 3' -52.6 NC_001875.2 + 125337 0.67 0.935289
Target:  5'- -gACGGCGGC-CAGCGUGuuGGCgCGG-Ca -3'
miRNA:   3'- aaUGUCGCUGuGUUGUAC--UCG-GCCaG- -5'
7020 3' -52.6 NC_001875.2 + 59891 0.67 0.929975
Target:  5'- -cGCGGCGACAgGcugcGCGcgGAGCgcgCGGUCa -3'
miRNA:   3'- aaUGUCGCUGUgU----UGUa-CUCG---GCCAG- -5'
7020 3' -52.6 NC_001875.2 + 123841 0.67 0.929975
Target:  5'- -aGCAGUuGCGCAAuCAgccGCCGGUCa -3'
miRNA:   3'- aaUGUCGcUGUGUU-GUacuCGGCCAG- -5'
7020 3' -52.6 NC_001875.2 + 107843 0.67 0.924397
Target:  5'- gUGCGccuuGCGACGC-GCGcGAGuuGGUCg -3'
miRNA:   3'- aAUGU----CGCUGUGuUGUaCUCggCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.