miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7023 5' -46.1 NC_001875.2 + 75037 0.66 0.99987
Target:  5'- uGAAcgAGUACGCGCUgucgUCAuu-GCa -3'
miRNA:   3'- -UUUuaUCGUGCGCGGaa--AGUuuuCGc -5'
7023 5' -46.1 NC_001875.2 + 47323 0.66 0.99987
Target:  5'- aAAGAUGacGCACGUGCUg-UCGGcGGCGg -3'
miRNA:   3'- -UUUUAU--CGUGCGCGGaaAGUUuUCGC- -5'
7023 5' -46.1 NC_001875.2 + 27195 0.66 0.99987
Target:  5'- cAGGUGGCACGCGCUaggaUCGGccuugucGGCGc -3'
miRNA:   3'- uUUUAUCGUGCGCGGaa--AGUUu------UCGC- -5'
7023 5' -46.1 NC_001875.2 + 31871 0.66 0.99987
Target:  5'- --cGUGGaCugGCGCCgguugCAAGuuGGCGa -3'
miRNA:   3'- uuuUAUC-GugCGCGGaaa--GUUU--UCGC- -5'
7023 5' -46.1 NC_001875.2 + 89480 0.66 0.99983
Target:  5'- aAAAGUGGCGCccucGCGCCg--CAAccGCu -3'
miRNA:   3'- -UUUUAUCGUG----CGCGGaaaGUUuuCGc -5'
7023 5' -46.1 NC_001875.2 + 33045 0.66 0.99983
Target:  5'- ----gGGCGcCGCGCCgcgCGGAuAGCGu -3'
miRNA:   3'- uuuuaUCGU-GCGCGGaaaGUUU-UCGC- -5'
7023 5' -46.1 NC_001875.2 + 77829 0.66 0.999779
Target:  5'- -cGGUAcGCGCGCGCCg--CAAGGccguGCGc -3'
miRNA:   3'- uuUUAU-CGUGCGCGGaaaGUUUU----CGC- -5'
7023 5' -46.1 NC_001875.2 + 109188 0.66 0.999779
Target:  5'- ----cAGCgaacGCGCGCCUUUUAuaccAGCa -3'
miRNA:   3'- uuuuaUCG----UGCGCGGAAAGUuu--UCGc -5'
7023 5' -46.1 NC_001875.2 + 121371 0.66 0.999779
Target:  5'- ----cAGCAaGCGCCaUUCAcuGAGCGc -3'
miRNA:   3'- uuuuaUCGUgCGCGGaAAGUu-UUCGC- -5'
7023 5' -46.1 NC_001875.2 + 66929 0.66 0.999779
Target:  5'- ----gGGCAUGCGCa--UCAacGAGGCGc -3'
miRNA:   3'- uuuuaUCGUGCGCGgaaAGU--UUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 93751 0.66 0.999722
Target:  5'- ----gAGCAUGCGCCacacacccacguugUCGAAcgGGCGg -3'
miRNA:   3'- uuuuaUCGUGCGCGGaa------------AGUUU--UCGC- -5'
7023 5' -46.1 NC_001875.2 + 86927 0.66 0.999715
Target:  5'- ----aAGCGC-CGCCUagagugCGAGGGCGa -3'
miRNA:   3'- uuuuaUCGUGcGCGGAaa----GUUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 114937 0.66 0.999715
Target:  5'- ----aGGCcCGCGCCgucgUCGAuGGGCGu -3'
miRNA:   3'- uuuuaUCGuGCGCGGaa--AGUU-UUCGC- -5'
7023 5' -46.1 NC_001875.2 + 115946 0.66 0.999715
Target:  5'- cAAAGUAGCGCGgGUCUUcggCAAu-GCa -3'
miRNA:   3'- -UUUUAUCGUGCgCGGAAa--GUUuuCGc -5'
7023 5' -46.1 NC_001875.2 + 126833 0.66 0.999715
Target:  5'- ----aAGCGCGCGCCgggCAuaguAAGUu -3'
miRNA:   3'- uuuuaUCGUGCGCGGaaaGUu---UUCGc -5'
7023 5' -46.1 NC_001875.2 + 77261 0.66 0.999715
Target:  5'- ----gGGCGCGcCGCCgggC-GAAGCGg -3'
miRNA:   3'- uuuuaUCGUGC-GCGGaaaGuUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 61897 0.66 0.999715
Target:  5'- --cGUGGCccgacACGCGCCgugUCAc-GGCGg -3'
miRNA:   3'- uuuUAUCG-----UGCGCGGaa-AGUuuUCGC- -5'
7023 5' -46.1 NC_001875.2 + 88808 0.67 0.999635
Target:  5'- uGAAAUAGCcCGCGCCcg-CGGcgcGCGg -3'
miRNA:   3'- -UUUUAUCGuGCGCGGaaaGUUuu-CGC- -5'
7023 5' -46.1 NC_001875.2 + 90710 0.67 0.999635
Target:  5'- ----cGGCGCGgcCGCCggUCAAgcGCGa -3'
miRNA:   3'- uuuuaUCGUGC--GCGGaaAGUUuuCGC- -5'
7023 5' -46.1 NC_001875.2 + 83325 0.67 0.999635
Target:  5'- ----gGGCGCGCGCCg------GGCGg -3'
miRNA:   3'- uuuuaUCGUGCGCGGaaaguuuUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.