miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7174 5' -52.6 NC_001900.1 + 1076 0.66 0.827182
Target:  5'- cGGAAgAGgAUCcGcCGGUAGCgGCGGUg -3'
miRNA:   3'- -CCUUgUUgUGGaC-GUCAUCGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 33753 0.66 0.824363
Target:  5'- cGAACA-CACCgGgGGUcguggaggcguucgGGCCGUAGUa -3'
miRNA:   3'- cCUUGUuGUGGaCgUCA--------------UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 15533 0.66 0.817708
Target:  5'- cGAGCGAauCACCaagcaGCAGUacgaGGCUGCuGCg -3'
miRNA:   3'- cCUUGUU--GUGGa----CGUCA----UCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 18678 0.66 0.817708
Target:  5'- uGGAguacucGCAGCAgCUUGCcgacaAGUGGCUgggggaGCAGCa -3'
miRNA:   3'- -CCU------UGUUGU-GGACG-----UCAUCGG------CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 26380 0.66 0.81386
Target:  5'- cGGGcugacguACGACGCUUGCAcUcgaccgcugcgcugGGuCCGCAGCg -3'
miRNA:   3'- -CCU-------UGUUGUGGACGUcA--------------UC-GGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 36931 0.66 0.808027
Target:  5'- cGAccACAGCACCUucuGGUGGCCuccGUAGCc -3'
miRNA:   3'- cCU--UGUUGUGGAcg-UCAUCGG---CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 37867 0.66 0.808027
Target:  5'- aGAACAGCAgggcgauguCCUugaaguucucucGCgGGUGGCCGUAGUu -3'
miRNA:   3'- cCUUGUUGU---------GGA------------CG-UCAUCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 24787 0.66 0.808027
Target:  5'- gGGGGCGACACCacagccaccuucUcggGCGGUGGCaCGCucaucGCu -3'
miRNA:   3'- -CCUUGUUGUGG------------A---CGUCAUCG-GCGu----CG- -5'
7174 5' -52.6 NC_001900.1 + 41212 0.66 0.798149
Target:  5'- ---cCAGCACCUGCu---GgUGCAGCg -3'
miRNA:   3'- ccuuGUUGUGGACGucauCgGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 40298 0.66 0.798149
Target:  5'- ----uGugGCCggucgGCAGUgAGCCGCuGCg -3'
miRNA:   3'- ccuugUugUGGa----CGUCA-UCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 39800 0.66 0.798149
Target:  5'- cGGcGCucaGCCUcGUAGUAGCUGguGUu -3'
miRNA:   3'- -CCuUGuugUGGA-CGUCAUCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 11632 0.66 0.788086
Target:  5'- aGGAGCuuCGCCa--GGaGGCCGCuGCu -3'
miRNA:   3'- -CCUUGuuGUGGacgUCaUCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 737 0.66 0.788086
Target:  5'- uGGAACGucUACC-GCAGccGCUGguGCg -3'
miRNA:   3'- -CCUUGUu-GUGGaCGUCauCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 10598 0.67 0.767453
Target:  5'- gGGggUgauuccgccuGACGCCUgaGCAGUAuGCaGCGGCc -3'
miRNA:   3'- -CCuuG----------UUGUGGA--CGUCAU-CGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 5611 0.67 0.767453
Target:  5'- cGGAGCuGCGCUggGCAGgcaucgguGCCGCcuGGUa -3'
miRNA:   3'- -CCUUGuUGUGGa-CGUCau------CGGCG--UCG- -5'
7174 5' -52.6 NC_001900.1 + 40426 0.67 0.767453
Target:  5'- aGGA---ACACCaGCGGggcGCCGguGCc -3'
miRNA:   3'- -CCUuguUGUGGaCGUCau-CGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 19534 0.67 0.767453
Target:  5'- cGAACuucugGACACC-GCcGUGGCCGUGGg -3'
miRNA:   3'- cCUUG-----UUGUGGaCGuCAUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 20446 0.67 0.756909
Target:  5'- uGGuGCAACccguuCCUGCGcccugAGCUGCAGUu -3'
miRNA:   3'- -CCuUGUUGu----GGACGUca---UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 5959 0.67 0.756909
Target:  5'- uGGGCuGGCugCUGaacCGGccaGGCCGCAGCg -3'
miRNA:   3'- cCUUG-UUGugGAC---GUCa--UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 26895 0.67 0.735425
Target:  5'- cGGAACcguCGCCgucgGCGGUcuGGCCuuCAGCc -3'
miRNA:   3'- -CCUUGuu-GUGGa---CGUCA--UCGGc-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.