miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7196 3' -55.6 NC_001900.1 + 12513 0.66 0.721676
Target:  5'- gCGgGCCACCcGCaaagcgaugaUCGGCugggAGACCa -3'
miRNA:   3'- aGCgCGGUGGcUGg---------AGCUGua--UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 40763 0.66 0.721676
Target:  5'- -aGCGCCGCCGugaaccaccACCagGcCAUacggGGACCg -3'
miRNA:   3'- agCGCGGUGGC---------UGGagCuGUA----UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 16910 0.66 0.721676
Target:  5'- cCGCGCCGCuuguCGGCUUgGugGcuGGCCu -3'
miRNA:   3'- aGCGCGGUG----GCUGGAgCugUauCUGG- -5'
7196 3' -55.6 NC_001900.1 + 14281 0.66 0.721676
Target:  5'- -gGCGucacCCGCCGugCUCGAaccaaccuGGCCa -3'
miRNA:   3'- agCGC----GGUGGCugGAGCUguau----CUGG- -5'
7196 3' -55.6 NC_001900.1 + 44066 0.66 0.721676
Target:  5'- cCcCGCCGCCGugCUggagccCGACGagcauGACCg -3'
miRNA:   3'- aGcGCGGUGGCugGA------GCUGUau---CUGG- -5'
7196 3' -55.6 NC_001900.1 + 35628 0.66 0.721676
Target:  5'- -aGCaCCGCguCGGCCUCGAUGUcGAUCa -3'
miRNA:   3'- agCGcGGUG--GCUGGAGCUGUAuCUGG- -5'
7196 3' -55.6 NC_001900.1 + 3157 0.66 0.721676
Target:  5'- cUCGCgGCCAUCGAagUCUUGAgucGGACCc -3'
miRNA:   3'- -AGCG-CGGUGGCU--GGAGCUguaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 10469 0.66 0.720616
Target:  5'- aUGCGCCGCUgggacgaggaagaGGCCgCGAU--GGGCCu -3'
miRNA:   3'- aGCGCGGUGG-------------CUGGaGCUGuaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 41502 0.66 0.715307
Target:  5'- uUCGCGCCuuCGAUCUgcuccacgaaguacgUGACGUuguccgacAGGCCc -3'
miRNA:   3'- -AGCGCGGugGCUGGA---------------GCUGUA--------UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 33517 0.66 0.711044
Target:  5'- -gGCuCCACCG-CC-CGGCGagAGGCCg -3'
miRNA:   3'- agCGcGGUGGCuGGaGCUGUa-UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 16657 0.66 0.700337
Target:  5'- gUCGgGCU-CCGACgC-CGACA-AGGCCa -3'
miRNA:   3'- -AGCgCGGuGGCUG-GaGCUGUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 32109 0.66 0.700337
Target:  5'- -aGCGCCgaacGCUGACagcagCGACGgcAGGCCa -3'
miRNA:   3'- agCGCGG----UGGCUGga---GCUGUa-UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 4363 0.66 0.700337
Target:  5'- -aGCgGCCAgCGGCCUgGcugccGCAggGGACCg -3'
miRNA:   3'- agCG-CGGUgGCUGGAgC-----UGUa-UCUGG- -5'
7196 3' -55.6 NC_001900.1 + 5423 0.66 0.700337
Target:  5'- -gGaCGCCuacgacacccgaACCGACCUCGGCAac-ACCc -3'
miRNA:   3'- agC-GCGG------------UGGCUGGAGCUGUaucUGG- -5'
7196 3' -55.6 NC_001900.1 + 15484 0.66 0.700337
Target:  5'- uUCGCuUCACCuACCUCGACcacaaAGACg -3'
miRNA:   3'- -AGCGcGGUGGcUGGAGCUGua---UCUGg -5'
7196 3' -55.6 NC_001900.1 + 8515 0.66 0.678736
Target:  5'- cCGCuGCUucGCCGACCcggacaaguaccUCGACAagaUGGGCUu -3'
miRNA:   3'- aGCG-CGG--UGGCUGG------------AGCUGU---AUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 40182 0.66 0.678736
Target:  5'- aCGCGCCG-CGAUUUCGACc---ACCa -3'
miRNA:   3'- aGCGCGGUgGCUGGAGCUGuaucUGG- -5'
7196 3' -55.6 NC_001900.1 + 6099 0.66 0.678736
Target:  5'- uUCGCGUC-CC--CCUCGACGgAGGCg -3'
miRNA:   3'- -AGCGCGGuGGcuGGAGCUGUaUCUGg -5'
7196 3' -55.6 NC_001900.1 + 19830 0.66 0.678736
Target:  5'- cUCGuCGCCGucggaUGACCuUCGACGcGGACUu -3'
miRNA:   3'- -AGC-GCGGUg----GCUGG-AGCUGUaUCUGG- -5'
7196 3' -55.6 NC_001900.1 + 33793 0.66 0.667864
Target:  5'- cCGUGCgGCCacGGCCUCGACcaaGGugUc -3'
miRNA:   3'- aGCGCGgUGG--CUGGAGCUGua-UCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.