miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7198 3' -55.6 NC_001900.1 + 4185 0.66 0.705458
Target:  5'- uCUACCGGCaaccCCGGUaGGcGCaCCACu -3'
miRNA:   3'- -GGUGGCCGguuuGGCCA-CUaUG-GGUG- -5'
7198 3' -55.6 NC_001900.1 + 47006 0.66 0.705458
Target:  5'- gCugCGGUCuGAACCcuGGUGuagGCCCAg -3'
miRNA:   3'- gGugGCCGG-UUUGG--CCACua-UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 18580 0.66 0.694646
Target:  5'- aCCGCUGGUgcccgacgUGAGCCGGccguUGGUGCCgUACg -3'
miRNA:   3'- -GGUGGCCG--------GUUUGGCC----ACUAUGG-GUG- -5'
7198 3' -55.6 NC_001900.1 + 967 0.66 0.694646
Target:  5'- gCUGCUGGCCuacGGCCGGcugcGGUACUgCGCg -3'
miRNA:   3'- -GGUGGCCGGu--UUGGCCa---CUAUGG-GUG- -5'
7198 3' -55.6 NC_001900.1 + 32231 0.66 0.694646
Target:  5'- gUACC-GCCAcgcCCGGUGGuUGCCCGu -3'
miRNA:   3'- gGUGGcCGGUuu-GGCCACU-AUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 28126 0.66 0.694646
Target:  5'- aCCGcCCGGaCGAAcCCGGUGAgccaggAgCCGCc -3'
miRNA:   3'- -GGU-GGCCgGUUU-GGCCACUa-----UgGGUG- -5'
7198 3' -55.6 NC_001900.1 + 45114 0.66 0.683773
Target:  5'- -gACCGGCCGcguucGCCGuGgaggcgGGUACCgGCg -3'
miRNA:   3'- ggUGGCCGGUu----UGGC-Ca-----CUAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 17259 0.66 0.683773
Target:  5'- uUCACCgGGCuCGGGCCGGUcaucucgACCgGCa -3'
miRNA:   3'- -GGUGG-CCG-GUUUGGCCAcua----UGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 39570 0.66 0.672852
Target:  5'- aCgACCGGCCGugGACguaagcguCGGUGuaGCCCAg -3'
miRNA:   3'- -GgUGGCCGGU--UUG--------GCCACuaUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 4138 0.66 0.672852
Target:  5'- gCCgACCGGCgAAgcgGCCGGcGGUGacCCCAa -3'
miRNA:   3'- -GG-UGGCCGgUU---UGGCCaCUAU--GGGUg -5'
7198 3' -55.6 NC_001900.1 + 8639 0.66 0.661891
Target:  5'- gCACCGGCgCcccGCUGGUGuu-CCUGCa -3'
miRNA:   3'- gGUGGCCG-Guu-UGGCCACuauGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 41861 0.66 0.650903
Target:  5'- aCGCUGGCCAAGCuCGaUGAgcuggGCuaCCACg -3'
miRNA:   3'- gGUGGCCGGUUUG-GCcACUa----UG--GGUG- -5'
7198 3' -55.6 NC_001900.1 + 45565 0.66 0.650903
Target:  5'- gUCACCGGCCAGACCcugcgGGUuCUCGg -3'
miRNA:   3'- -GGUGGCCGGUUUGGcca--CUAuGGGUg -5'
7198 3' -55.6 NC_001900.1 + 25453 0.66 0.649803
Target:  5'- gCCACCGaCCucgacauAGACCccgucGGUGAUGCCgACc -3'
miRNA:   3'- -GGUGGCcGG-------UUUGG-----CCACUAUGGgUG- -5'
7198 3' -55.6 NC_001900.1 + 43098 0.66 0.648703
Target:  5'- gCUugCGGCCuGGCCGGUucagcagccaGCCCAg -3'
miRNA:   3'- -GGugGCCGGuUUGGCCAcua-------UGGGUg -5'
7198 3' -55.6 NC_001900.1 + 31043 0.67 0.639898
Target:  5'- aCCACCGGCaCGauGACCGGcaucagcuUGGUGaaCGCc -3'
miRNA:   3'- -GGUGGCCG-GU--UUGGCC--------ACUAUggGUG- -5'
7198 3' -55.6 NC_001900.1 + 28048 0.67 0.639898
Target:  5'- gCCACCGucaCAGGCCG-UGAgGCCCAg -3'
miRNA:   3'- -GGUGGCcg-GUUUGGCcACUaUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 36808 0.67 0.636595
Target:  5'- gUCGCCGacCCAGugCGGgaucuucuggcccgUGGUACCCAUc -3'
miRNA:   3'- -GGUGGCc-GGUUugGCC--------------ACUAUGGGUG- -5'
7198 3' -55.6 NC_001900.1 + 12246 0.67 0.633291
Target:  5'- aCCACgGGCCAGAagaucCCGcacugggucggcgacGUGAgUGCCCAg -3'
miRNA:   3'- -GGUGgCCGGUUU-----GGC---------------CACU-AUGGGUg -5'
7198 3' -55.6 NC_001900.1 + 44005 0.67 0.617876
Target:  5'- uUCACCgGGCC--ACCGGgGAUGUCCAUc -3'
miRNA:   3'- -GGUGG-CCGGuuUGGCCaCUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.