Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7206 | 5' | -54.1 | NC_001900.1 | + | 46599 | 0.66 | 0.761917 |
Target: 5'- aGGUCAGCccguCGUCGUACGcgucgugguAGGuCCAGUc -3' miRNA: 3'- -CCGGUUGcu--GUAGCGUGU---------UCC-GGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 21224 | 0.66 | 0.760877 |
Target: 5'- aGGaCCGACGAguUCGCGgAAcuGGCUacaacggAGCg -3' miRNA: 3'- -CC-GGUUGCUguAGCGUgUU--CCGG-------UCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 555 | 0.66 | 0.760877 |
Target: 5'- uGCC-GCGACAUCGCGaauacgccgccguUucGGgCGGCg -3' miRNA: 3'- cCGGuUGCUGUAGCGU-------------GuuCCgGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 21971 | 0.66 | 0.75775 |
Target: 5'- gGGCCAcguugcccgcgacCGACAUCaGCGacgaGAGGaUCAGCa -3' miRNA: 3'- -CCGGUu------------GCUGUAG-CGUg---UUCC-GGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 13014 | 0.66 | 0.75146 |
Target: 5'- uGGUCAGCGGCGgcgGCG-AGGGCUgAGCc -3' miRNA: 3'- -CCGGUUGCUGUag-CGUgUUCCGG-UCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 17027 | 0.66 | 0.75146 |
Target: 5'- cGCCAACGGC--CGCuacCAAGGUgcucaaCGGCg -3' miRNA: 3'- cCGGUUGCUGuaGCGu--GUUCCG------GUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 28915 | 0.66 | 0.75146 |
Target: 5'- aGGCCGcgcagACGGaaGUCGC-CGucGCCAGCu -3' miRNA: 3'- -CCGGU-----UGCUg-UAGCGuGUucCGGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 30401 | 0.66 | 0.75146 |
Target: 5'- cGCCuGCaGCGcCGCAC--GGCCGGCc -3' miRNA: 3'- cCGGuUGcUGUaGCGUGuuCCGGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 11259 | 0.66 | 0.750407 |
Target: 5'- uGGCCAACcuGAUgauccugaugaagAUCGC-CAGGGUCAaagGCa -3' miRNA: 3'- -CCGGUUG--CUG-------------UAGCGuGUUCCGGU---CG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 7203 | 0.66 | 0.740878 |
Target: 5'- -cCCAGCu-CAUCGaGCuuGGCCAGCg -3' miRNA: 3'- ccGGUUGcuGUAGCgUGuuCCGGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 5464 | 0.66 | 0.740878 |
Target: 5'- aGGUCGACGGagacgGUCGgcucUACAAGGgCCGGUc -3' miRNA: 3'- -CCGGUUGCUg----UAGC----GUGUUCC-GGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 18663 | 0.66 | 0.740878 |
Target: 5'- aGGCCGGCcguGCggCGCuGC-AGGCgCAGCu -3' miRNA: 3'- -CCGGUUGc--UGuaGCG-UGuUCCG-GUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 12133 | 0.66 | 0.740878 |
Target: 5'- aGGCCAccagaagguGCuGugGUCGaugGAGGUCGGCa -3' miRNA: 3'- -CCGGU---------UG-CugUAGCgugUUCCGGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 38550 | 0.66 | 0.740878 |
Target: 5'- gGGUCGGCGucgacCAUCGUGCccagcAGGCCgaGGCc -3' miRNA: 3'- -CCGGUUGCu----GUAGCGUGu----UCCGG--UCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 42560 | 0.66 | 0.730182 |
Target: 5'- uGGCCAGCgGGCcgaGCugGGGGaCCGcGCc -3' miRNA: 3'- -CCGGUUG-CUGuagCGugUUCC-GGU-CG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 23999 | 0.66 | 0.730182 |
Target: 5'- -cCCAACGGCG--GCACAGGugcuaCCAGCg -3' miRNA: 3'- ccGGUUGCUGUagCGUGUUCc----GGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 9021 | 0.66 | 0.729107 |
Target: 5'- cGCCAucGCGAU-UCGCAaggucacCAAGGacuCCAGCa -3' miRNA: 3'- cCGGU--UGCUGuAGCGU-------GUUCC---GGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 33271 | 0.66 | 0.719385 |
Target: 5'- uGCCGucacccuugaACGugAUCGacaaCGCGucGGCCGGCg -3' miRNA: 3'- cCGGU----------UGCugUAGC----GUGUu-CCGGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 34744 | 0.66 | 0.719385 |
Target: 5'- uGGUCGAUcucCAUCGCAuCGAgaccGGUCAGCg -3' miRNA: 3'- -CCGGUUGcu-GUAGCGU-GUU----CCGGUCG- -5' |
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7206 | 5' | -54.1 | NC_001900.1 | + | 25194 | 0.66 | 0.719385 |
Target: 5'- uGCCGACGAUgAUCG-ACAAccCCAGCa -3' miRNA: 3'- cCGGUUGCUG-UAGCgUGUUccGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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