miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7206 5' -54.1 NC_001900.1 + 46599 0.66 0.761917
Target:  5'- aGGUCAGCccguCGUCGUACGcgucgugguAGGuCCAGUc -3'
miRNA:   3'- -CCGGUUGcu--GUAGCGUGU---------UCC-GGUCG- -5'
7206 5' -54.1 NC_001900.1 + 21224 0.66 0.760877
Target:  5'- aGGaCCGACGAguUCGCGgAAcuGGCUacaacggAGCg -3'
miRNA:   3'- -CC-GGUUGCUguAGCGUgUU--CCGG-------UCG- -5'
7206 5' -54.1 NC_001900.1 + 555 0.66 0.760877
Target:  5'- uGCC-GCGACAUCGCGaauacgccgccguUucGGgCGGCg -3'
miRNA:   3'- cCGGuUGCUGUAGCGU-------------GuuCCgGUCG- -5'
7206 5' -54.1 NC_001900.1 + 21971 0.66 0.75775
Target:  5'- gGGCCAcguugcccgcgacCGACAUCaGCGacgaGAGGaUCAGCa -3'
miRNA:   3'- -CCGGUu------------GCUGUAG-CGUg---UUCC-GGUCG- -5'
7206 5' -54.1 NC_001900.1 + 28915 0.66 0.75146
Target:  5'- aGGCCGcgcagACGGaaGUCGC-CGucGCCAGCu -3'
miRNA:   3'- -CCGGU-----UGCUg-UAGCGuGUucCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 17027 0.66 0.75146
Target:  5'- cGCCAACGGC--CGCuacCAAGGUgcucaaCGGCg -3'
miRNA:   3'- cCGGUUGCUGuaGCGu--GUUCCG------GUCG- -5'
7206 5' -54.1 NC_001900.1 + 13014 0.66 0.75146
Target:  5'- uGGUCAGCGGCGgcgGCG-AGGGCUgAGCc -3'
miRNA:   3'- -CCGGUUGCUGUag-CGUgUUCCGG-UCG- -5'
7206 5' -54.1 NC_001900.1 + 30401 0.66 0.75146
Target:  5'- cGCCuGCaGCGcCGCAC--GGCCGGCc -3'
miRNA:   3'- cCGGuUGcUGUaGCGUGuuCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 11259 0.66 0.750407
Target:  5'- uGGCCAACcuGAUgauccugaugaagAUCGC-CAGGGUCAaagGCa -3'
miRNA:   3'- -CCGGUUG--CUG-------------UAGCGuGUUCCGGU---CG- -5'
7206 5' -54.1 NC_001900.1 + 7203 0.66 0.740878
Target:  5'- -cCCAGCu-CAUCGaGCuuGGCCAGCg -3'
miRNA:   3'- ccGGUUGcuGUAGCgUGuuCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 5464 0.66 0.740878
Target:  5'- aGGUCGACGGagacgGUCGgcucUACAAGGgCCGGUc -3'
miRNA:   3'- -CCGGUUGCUg----UAGC----GUGUUCC-GGUCG- -5'
7206 5' -54.1 NC_001900.1 + 18663 0.66 0.740878
Target:  5'- aGGCCGGCcguGCggCGCuGC-AGGCgCAGCu -3'
miRNA:   3'- -CCGGUUGc--UGuaGCG-UGuUCCG-GUCG- -5'
7206 5' -54.1 NC_001900.1 + 12133 0.66 0.740878
Target:  5'- aGGCCAccagaagguGCuGugGUCGaugGAGGUCGGCa -3'
miRNA:   3'- -CCGGU---------UG-CugUAGCgugUUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 38550 0.66 0.740878
Target:  5'- gGGUCGGCGucgacCAUCGUGCccagcAGGCCgaGGCc -3'
miRNA:   3'- -CCGGUUGCu----GUAGCGUGu----UCCGG--UCG- -5'
7206 5' -54.1 NC_001900.1 + 42560 0.66 0.730182
Target:  5'- uGGCCAGCgGGCcgaGCugGGGGaCCGcGCc -3'
miRNA:   3'- -CCGGUUG-CUGuagCGugUUCC-GGU-CG- -5'
7206 5' -54.1 NC_001900.1 + 23999 0.66 0.730182
Target:  5'- -cCCAACGGCG--GCACAGGugcuaCCAGCg -3'
miRNA:   3'- ccGGUUGCUGUagCGUGUUCc----GGUCG- -5'
7206 5' -54.1 NC_001900.1 + 9021 0.66 0.729107
Target:  5'- cGCCAucGCGAU-UCGCAaggucacCAAGGacuCCAGCa -3'
miRNA:   3'- cCGGU--UGCUGuAGCGU-------GUUCC---GGUCG- -5'
7206 5' -54.1 NC_001900.1 + 33271 0.66 0.719385
Target:  5'- uGCCGucacccuugaACGugAUCGacaaCGCGucGGCCGGCg -3'
miRNA:   3'- cCGGU----------UGCugUAGC----GUGUu-CCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 34744 0.66 0.719385
Target:  5'- uGGUCGAUcucCAUCGCAuCGAgaccGGUCAGCg -3'
miRNA:   3'- -CCGGUUGcu-GUAGCGU-GUU----CCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 25194 0.66 0.719385
Target:  5'- uGCCGACGAUgAUCG-ACAAccCCAGCa -3'
miRNA:   3'- cCGGUUGCUG-UAGCgUGUUccGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.