miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7234 5' -53.4 NC_001900.1 + 33100 0.66 0.815419
Target:  5'- cCAGCG-CGGCGAuCAGcuucuugggcuucguGGCGAUCagCCGg -3'
miRNA:   3'- -GUUGCuGCCGCU-GUU---------------UCGCUAG--GGCg -5'
7234 5' -53.4 NC_001900.1 + 30982 0.66 0.811626
Target:  5'- gAACGAC-GCGAUGGAcGCGccagCCUGCa -3'
miRNA:   3'- gUUGCUGcCGCUGUUU-CGCua--GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 13722 0.66 0.811626
Target:  5'- -cGCGAUGuGCGACcacGAAGCGgAUCCUcCg -3'
miRNA:   3'- guUGCUGC-CGCUG---UUUCGC-UAGGGcG- -5'
7234 5' -53.4 NC_001900.1 + 21918 0.66 0.80201
Target:  5'- aCAACGGCGGaauCGccGCGAUCaccauCGCg -3'
miRNA:   3'- -GUUGCUGCCgcuGUuuCGCUAGg----GCG- -5'
7234 5' -53.4 NC_001900.1 + 19435 0.66 0.792212
Target:  5'- uCAACcuGACGGUGAUGucGUGcAUCUCGUa -3'
miRNA:   3'- -GUUG--CUGCCGCUGUuuCGC-UAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 21920 0.66 0.782243
Target:  5'- uGAUuGCaGGCGuCGGGGCGAUCaCGCa -3'
miRNA:   3'- gUUGcUG-CCGCuGUUUCGCUAGgGCG- -5'
7234 5' -53.4 NC_001900.1 + 24092 0.66 0.782243
Target:  5'- uGGCG-CGGCGACAAGacGUGGcagCCGCu -3'
miRNA:   3'- gUUGCuGCCGCUGUUU--CGCUag-GGCG- -5'
7234 5' -53.4 NC_001900.1 + 23923 0.66 0.782243
Target:  5'- uCAACGACaaCGACcccAGCGGUCUCGg -3'
miRNA:   3'- -GUUGCUGccGCUGuu-UCGCUAGGGCg -5'
7234 5' -53.4 NC_001900.1 + 38613 0.66 0.782243
Target:  5'- ---aGACGGCGAUAccG-GAUCgCUGCa -3'
miRNA:   3'- guugCUGCCGCUGUuuCgCUAG-GGCG- -5'
7234 5' -53.4 NC_001900.1 + 20833 0.66 0.782243
Target:  5'- -cACGACGcuacCGACGAGGCcg-UCCGCa -3'
miRNA:   3'- guUGCUGCc---GCUGUUUCGcuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 22747 0.66 0.782243
Target:  5'- aCAACcgGAUGGaCGcCGAAGCGuggCUCGCg -3'
miRNA:   3'- -GUUG--CUGCC-GCuGUUUCGCua-GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 38626 0.67 0.776184
Target:  5'- -cGCGcuCGGCGAUGGAguagcccauguccuuGCGAgCCCGCu -3'
miRNA:   3'- guUGCu-GCCGCUGUUU---------------CGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 12611 0.67 0.772114
Target:  5'- gAACGACGGCaa-GAAGUGGaCCCa- -3'
miRNA:   3'- gUUGCUGCCGcugUUUCGCUaGGGcg -5'
7234 5' -53.4 NC_001900.1 + 5148 0.67 0.772114
Target:  5'- -uACGACGGCGcACGcgccugGAaCGA-CCCGCu -3'
miRNA:   3'- guUGCUGCCGC-UGU------UUcGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 43204 0.67 0.772114
Target:  5'- -cACGACGGUGuuGAacAGCgccccgugGAUCUCGCg -3'
miRNA:   3'- guUGCUGCCGCugUU--UCG--------CUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 41775 0.67 0.761838
Target:  5'- --cCGGCGGCGA--GGGCGAUggCUGCg -3'
miRNA:   3'- guuGCUGCCGCUguUUCGCUAg-GGCG- -5'
7234 5' -53.4 NC_001900.1 + 20684 0.67 0.761838
Target:  5'- --uCGACGGUGACGA-GCa--CCUGCa -3'
miRNA:   3'- guuGCUGCCGCUGUUuCGcuaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 36639 0.67 0.761838
Target:  5'- aGACGACGGuCGAgGuugcGGGUGAUCUCcucgGCg -3'
miRNA:   3'- gUUGCUGCC-GCUgU----UUCGCUAGGG----CG- -5'
7234 5' -53.4 NC_001900.1 + 33626 0.67 0.760803
Target:  5'- aGAuCGGCGGCGACAuccacgcccucguAGGCG-UCCgGg -3'
miRNA:   3'- gUU-GCUGCCGCUGU-------------UUCGCuAGGgCg -5'
7234 5' -53.4 NC_001900.1 + 31095 0.67 0.751425
Target:  5'- cCAGCGACGGa-GCGAGcuguGCGAUCgCGg -3'
miRNA:   3'- -GUUGCUGCCgcUGUUU----CGCUAGgGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.