miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7244 5' -54.4 NC_001900.1 + 5795 0.65 0.770976
Target:  5'- cCUACaCAucGGCCA-CGCCAAgguagcggaggacCGAGaCUGGg -3'
miRNA:   3'- -GGUG-GU--UCGGUaGCGGUU-------------GCUC-GACC- -5'
7244 5' -54.4 NC_001900.1 + 40724 0.65 0.768938
Target:  5'- cCC-CCAAGCCcagcggucagcgauGUCGUCAgcgccGCGAGCg-- -3'
miRNA:   3'- -GGuGGUUCGG--------------UAGCGGU-----UGCUCGacc -5'
7244 5' -54.4 NC_001900.1 + 16948 0.66 0.761759
Target:  5'- -gGCCu-GCCGUCGCUgcuguAGCGuucggcGCUGGa -3'
miRNA:   3'- ggUGGuuCGGUAGCGG-----UUGCu-----CGACC- -5'
7244 5' -54.4 NC_001900.1 + 28174 0.66 0.761759
Target:  5'- uUCuCC-AGCag-CGCCucgGCGAGCUGGc -3'
miRNA:   3'- -GGuGGuUCGguaGCGGu--UGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 25126 0.66 0.761759
Target:  5'- -gACCGAGCC---GCCAcCGAgaccGCUGGg -3'
miRNA:   3'- ggUGGUUCGGuagCGGUuGCU----CGACC- -5'
7244 5' -54.4 NC_001900.1 + 31660 0.66 0.75139
Target:  5'- uUCACCGAagguccGCC-UCGCgGuguCGAGCUGa -3'
miRNA:   3'- -GGUGGUU------CGGuAGCGgUu--GCUCGACc -5'
7244 5' -54.4 NC_001900.1 + 1266 0.66 0.750347
Target:  5'- gCACCuGAGCUGUcgacgguucgcacCGUCGACgcuGAGCUGGa -3'
miRNA:   3'- gGUGG-UUCGGUA-------------GCGGUUG---CUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 25785 0.66 0.740898
Target:  5'- cUCGCUcgAAGUCAUcccCGCCAGCGAuGCcGGu -3'
miRNA:   3'- -GGUGG--UUCGGUA---GCGGUUGCU-CGaCC- -5'
7244 5' -54.4 NC_001900.1 + 44013 0.66 0.740898
Target:  5'- gCCACCGGGgauguCCAUCGUCAucaGCGuGCa-- -3'
miRNA:   3'- -GGUGGUUC-----GGUAGCGGU---UGCuCGacc -5'
7244 5' -54.4 NC_001900.1 + 30050 0.66 0.740898
Target:  5'- gCGCgAGGUCcgCGCCugcAGCGGGUUGa -3'
miRNA:   3'- gGUGgUUCGGuaGCGG---UUGCUCGACc -5'
7244 5' -54.4 NC_001900.1 + 35295 0.66 0.739843
Target:  5'- aCGCCcgacGCCcacagauGUCGaCCAGCGGGCaGGa -3'
miRNA:   3'- gGUGGuu--CGG-------UAGC-GGUUGCUCGaCC- -5'
7244 5' -54.4 NC_001900.1 + 16651 0.66 0.730294
Target:  5'- gC-CCAGGCCAagGCCGACuucaagcGGCUGa -3'
miRNA:   3'- gGuGGUUCGGUagCGGUUGc------UCGACc -5'
7244 5' -54.4 NC_001900.1 + 15956 0.66 0.730294
Target:  5'- gCCACgAAGCCcagaagcugAUCGCCGc---GCUGGa -3'
miRNA:   3'- -GGUGgUUCGG---------UAGCGGUugcuCGACC- -5'
7244 5' -54.4 NC_001900.1 + 23906 0.66 0.730294
Target:  5'- gUACCcGGCCcgaGCCucuGCGAgGCUGGc -3'
miRNA:   3'- gGUGGuUCGGuagCGGu--UGCU-CGACC- -5'
7244 5' -54.4 NC_001900.1 + 47818 0.66 0.729228
Target:  5'- gCCGCCAGcuccgcuGCCGcCGCCAcCGAGUa-- -3'
miRNA:   3'- -GGUGGUU-------CGGUaGCGGUuGCUCGacc -5'
7244 5' -54.4 NC_001900.1 + 36444 0.66 0.719591
Target:  5'- cUCACCGGGCCGcagcUCGCC---GAGCUu- -3'
miRNA:   3'- -GGUGGUUCGGU----AGCGGuugCUCGAcc -5'
7244 5' -54.4 NC_001900.1 + 14138 0.66 0.719591
Target:  5'- gCCACCGAGUacgacuCAUCGCCcGCacuGGCgcgGGu -3'
miRNA:   3'- -GGUGGUUCG------GUAGCGGuUGc--UCGa--CC- -5'
7244 5' -54.4 NC_001900.1 + 4477 0.66 0.719591
Target:  5'- uCCGCU-GGCacuaCGCCAACGAcGUUGGa -3'
miRNA:   3'- -GGUGGuUCGgua-GCGGUUGCU-CGACC- -5'
7244 5' -54.4 NC_001900.1 + 8983 0.66 0.719591
Target:  5'- gCCACUAcGCCA-CGCUGGCguuccGAGCUGc -3'
miRNA:   3'- -GGUGGUuCGGUaGCGGUUG-----CUCGACc -5'
7244 5' -54.4 NC_001900.1 + 36235 0.66 0.719591
Target:  5'- aCCGCCGA-UC-UgGCCccaGAUGAGCUGGg -3'
miRNA:   3'- -GGUGGUUcGGuAgCGG---UUGCUCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.