miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 9321 0.66 0.960671
Target:  5'- uCAUgGAUGCUGGcugACCcggagcuGGCGGCUg -3'
miRNA:   3'- cGUAgCUACGGCUa--UGGuu-----UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 20888 0.66 0.960671
Target:  5'- aCAUCGAggacaacucugGCUGGggcACCGAGACcGCCu -3'
miRNA:   3'- cGUAGCUa----------CGGCUa--UGGUUUUGcCGG- -5'
7249 5' -49.3 NC_001900.1 + 25162 0.66 0.960671
Target:  5'- cGCAgaggcUCGG-GCCGGguaCGAGGCGaGCCu -3'
miRNA:   3'- -CGU-----AGCUaCGGCUaugGUUUUGC-CGG- -5'
7249 5' -49.3 NC_001900.1 + 30583 0.66 0.956559
Target:  5'- -gGUCGAUgGUCGA--CCAGAucuUGGCCu -3'
miRNA:   3'- cgUAGCUA-CGGCUauGGUUUu--GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 24495 0.66 0.956559
Target:  5'- aGCGUucgaccCGGUGCUGAcuCCGGucacGGCGGUCg -3'
miRNA:   3'- -CGUA------GCUACGGCUauGGUU----UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 9019 0.66 0.952164
Target:  5'- aGC-UCGGggagGCCGugACCGAcaucgucggcGACGGCUa -3'
miRNA:   3'- -CGuAGCUa---CGGCuaUGGUU----------UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 28207 0.66 0.952164
Target:  5'- ---gCGAUGUCGuugGCCucguccuugcGGACGGCCu -3'
miRNA:   3'- cguaGCUACGGCua-UGGu---------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 39109 0.66 0.950789
Target:  5'- gGCcUCGAUcGgcgcuaugcgcuccCCGAUgACCuGGACGGCCg -3'
miRNA:   3'- -CGuAGCUA-C--------------GGCUA-UGGuUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 36602 0.66 0.947479
Target:  5'- uGCAUCGccgcGCCGucgaacGCCAucgcgaAGGCGGUCg -3'
miRNA:   3'- -CGUAGCua--CGGCua----UGGU------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 21630 0.66 0.947479
Target:  5'- aCAUCGGUGCuCGGcUACC----CGGUCg -3'
miRNA:   3'- cGUAGCUACG-GCU-AUGGuuuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 42441 0.66 0.947479
Target:  5'- -gAUCGGgcugGCCcGUGCCGuGAACGGUg -3'
miRNA:   3'- cgUAGCUa---CGGcUAUGGU-UUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 10730 0.66 0.947479
Target:  5'- uUcgCGAaGUCGGUgGCCAAGACGcuGCCg -3'
miRNA:   3'- cGuaGCUaCGGCUA-UGGUUUUGC--CGG- -5'
7249 5' -49.3 NC_001900.1 + 26072 0.66 0.944528
Target:  5'- -gGUUGAUGCCGAgggccugcagcagcaUGuCCAcGAUGGUCu -3'
miRNA:   3'- cgUAGCUACGGCU---------------AU-GGUuUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 4394 0.66 0.942501
Target:  5'- cGCGUUccacGCUGucGCCGAGGCGGUCg -3'
miRNA:   3'- -CGUAGcua-CGGCuaUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 8166 0.66 0.942501
Target:  5'- aCAUCc---CCGGcACCGAGACGGUCg -3'
miRNA:   3'- cGUAGcuacGGCUaUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 5349 0.66 0.942501
Target:  5'- cGCAUcgCGAUGUgGcucgcCCAGAuCGGCCa -3'
miRNA:   3'- -CGUA--GCUACGgCuau--GGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 41084 0.66 0.942501
Target:  5'- ---gCGGgccagGCCGGUgACCuc-GCGGCCg -3'
miRNA:   3'- cguaGCUa----CGGCUA-UGGuuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 23170 0.66 0.942501
Target:  5'- uCGUUGAgccgGCCGAgcagAUCGguGAGCuGGCCg -3'
miRNA:   3'- cGUAGCUa---CGGCUa---UGGU--UUUG-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 42819 0.67 0.939372
Target:  5'- cGCGUCGAUcccgccccagaucagGgCGAUGCCcAGGauGCCg -3'
miRNA:   3'- -CGUAGCUA---------------CgGCUAUGGuUUUgcCGG- -5'
7249 5' -49.3 NC_001900.1 + 16724 0.67 0.937226
Target:  5'- cCGUCGAUGUCaacgucgacaagGAcACCAAGgGCGGCUu -3'
miRNA:   3'- cGUAGCUACGG------------CUaUGGUUU-UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.