miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 24852 0.66 0.673154
Target:  5'- gGCUGUGGUGUCGCccccuuUGCCGCCc -3'
miRNA:   3'- aCGGCGCUGUAGCGcuuau-GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 42079 0.66 0.673154
Target:  5'- gGCCgGUGACGUgGUGGAgcccgaucACGCaagaGCCa -3'
miRNA:   3'- aCGG-CGCUGUAgCGCUUa-------UGCGg---CGG- -5'
7255 5' -56.1 NC_001900.1 + 15246 0.66 0.673154
Target:  5'- aGCCcuUGACcUCG-GAAU-CGCCGCCc -3'
miRNA:   3'- aCGGc-GCUGuAGCgCUUAuGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 5238 0.66 0.672064
Target:  5'- aGUCGUGGaagaGCGGucguuccaggcgcGUGCGCCGUCg -3'
miRNA:   3'- aCGGCGCUguagCGCU-------------UAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 38342 0.66 0.663334
Target:  5'- gGCCacCGACuUCGCGAAcuccauaccgggcuCGUCGCCg -3'
miRNA:   3'- aCGGc-GCUGuAGCGCUUau------------GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 24037 0.66 0.662241
Target:  5'- aUGCCGaCGACGcCGguuuCGAGguggACcgaGCCGCCa -3'
miRNA:   3'- -ACGGC-GCUGUaGC----GCUUa---UG---CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 39695 0.66 0.662241
Target:  5'- cGCCGUGggaacagauccaGCAgagccagCGCGAugagaucaGCCGCCa -3'
miRNA:   3'- aCGGCGC------------UGUa------GCGCUuaug----CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 6785 0.66 0.6513
Target:  5'- gGCCGCaGCgggguaGUUGCcGAUGgGCUGCCa -3'
miRNA:   3'- aCGGCGcUG------UAGCGcUUAUgCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 21082 0.66 0.6513
Target:  5'- cGCCGgGgaACGUguagucaccCGUGAAUACGUCGaCCc -3'
miRNA:   3'- aCGGCgC--UGUA---------GCGCUUAUGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 35168 0.66 0.640342
Target:  5'- cGUCGCGACGaggaccaCGaCGAcUACGCUGaCCu -3'
miRNA:   3'- aCGGCGCUGUa------GC-GCUuAUGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 35979 0.66 0.639246
Target:  5'- gUGCU-CGACcagcaugAUCGCGAuguuCGCCGUCg -3'
miRNA:   3'- -ACGGcGCUG-------UAGCGCUuau-GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 36183 0.66 0.633763
Target:  5'- cGCCuCGGCAgccgaaccccucucCGgGAcgACGCCGUCg -3'
miRNA:   3'- aCGGcGCUGUa-------------GCgCUuaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10641 0.66 0.629376
Target:  5'- gGCCGUGAuCAcugcggggcUCGcCGggUACGUccagcgguuCGCCa -3'
miRNA:   3'- aCGGCGCU-GU---------AGC-GCuuAUGCG---------GCGG- -5'
7255 5' -56.1 NC_001900.1 + 24814 0.66 0.629376
Target:  5'- gGCgGUGGCA-CGCucAU-CGCUGCCg -3'
miRNA:   3'- aCGgCGCUGUaGCGcuUAuGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 5915 0.66 0.629376
Target:  5'- cGCCcCGugGaucUCGCGGAUGaaCCGCUg -3'
miRNA:   3'- aCGGcGCugU---AGCGCUUAUgcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 24095 0.66 0.629376
Target:  5'- cGCgGCGACAagaCGUGGca--GCCGCUg -3'
miRNA:   3'- aCGgCGCUGUa--GCGCUuaugCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 43805 0.66 0.629376
Target:  5'- cGCUGUGAg--CGCGAGcgaaccggaACGCCGCUu -3'
miRNA:   3'- aCGGCGCUguaGCGCUUa--------UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 44671 0.67 0.618413
Target:  5'- cGCCucgGCGACAgCGUGGA-ACGCgGUCc -3'
miRNA:   3'- aCGG---CGCUGUaGCGCUUaUGCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 26699 0.67 0.615126
Target:  5'- gGCCGCGACcuuagaGCGAcacuaaugaccugcAuuUAUGCUGCCc -3'
miRNA:   3'- aCGGCGCUGuag---CGCU--------------U--AUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 20164 0.67 0.607462
Target:  5'- cUG-CGCGGCcucGUCGCGggUgaGCGaCUGCUg -3'
miRNA:   3'- -ACgGCGCUG---UAGCGCuuA--UGC-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.