miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7266 3' -65.8 NC_001900.1 + 24849 0.66 0.256467
Target:  5'- uGUGGuGuCGCCCccuuuGCCG-CCCGcGCCGGUc -3'
miRNA:   3'- uCGCC-C-GUGGG-----CGGCuGGGC-UGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 48302 0.66 0.256467
Target:  5'- cGCuGGCauaaggcgcuACCCGCuCGACUC-ACCGGUc -3'
miRNA:   3'- uCGcCCG----------UGGGCG-GCUGGGcUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 49046 0.66 0.256467
Target:  5'- aGGgGGGUuCCCcccaggggcGCCuuCCUGACCGGUc -3'
miRNA:   3'- -UCgCCCGuGGG---------CGGcuGGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 6267 0.66 0.256467
Target:  5'- cGCGGGCGCagCCGCgaacaucggCGACaUCGucGCUGGCg -3'
miRNA:   3'- uCGCCCGUG--GGCG---------GCUG-GGC--UGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 25547 0.66 0.250375
Target:  5'- cGUGGGaGCCaCGCuggCGGCUCaGGCCGGUg -3'
miRNA:   3'- uCGCCCgUGG-GCG---GCUGGG-CUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 29095 0.66 0.250375
Target:  5'- cGGCGucUACaCCGCCGAugucCCCGAaggucggccucCCGGCu -3'
miRNA:   3'- -UCGCccGUG-GGCGGCU----GGGCU-----------GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 21350 0.66 0.249772
Target:  5'- cAGCGGGgGCagGUCGAUcgcgccaCCGACCGcGCc -3'
miRNA:   3'- -UCGCCCgUGggCGGCUG-------GGCUGGC-CG- -5'
7266 3' -65.8 NC_001900.1 + 37741 0.66 0.246777
Target:  5'- cAGUGGGaCACCUugGCCGACgUaccgaaggacgugaaGACCGuGCg -3'
miRNA:   3'- -UCGCCC-GUGGG--CGGCUGgG---------------CUGGC-CG- -5'
7266 3' -65.8 NC_001900.1 + 17263 0.66 0.244402
Target:  5'- -cCGGGCucggGCCgGUCauCUCGACCGGCa -3'
miRNA:   3'- ucGCCCG----UGGgCGGcuGGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 30701 0.66 0.244402
Target:  5'- cAGCGaguGGCcgaACCCaCCGGCCCcgaaaGGCCGGg -3'
miRNA:   3'- -UCGC---CCG---UGGGcGGCUGGG-----CUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 884 0.66 0.244402
Target:  5'- -aUGGGCAUCCGCuccuCGAaggUCGACCaGGCg -3'
miRNA:   3'- ucGCCCGUGGGCG----GCUg--GGCUGG-CCG- -5'
7266 3' -65.8 NC_001900.1 + 10759 0.66 0.243811
Target:  5'- cAGCGucGGUAUgcggaagCUGCCGACCUgGGCCGGg -3'
miRNA:   3'- -UCGC--CCGUG-------GGCGGCUGGG-CUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 19610 0.66 0.238548
Target:  5'- gGGCGGGCucaacCCCaCCGACCaguacaucgcacCGAaguggaccguucCCGGCu -3'
miRNA:   3'- -UCGCCCGu----GGGcGGCUGG------------GCU------------GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 17836 0.66 0.232812
Target:  5'- cGCuGGuCACCuCGCuCGGCCCGuACCuGCc -3'
miRNA:   3'- uCGcCC-GUGG-GCG-GCUGGGC-UGGcCG- -5'
7266 3' -65.8 NC_001900.1 + 24592 0.66 0.232812
Target:  5'- --aGGuGUACgCGCCGACCgccgUGACCGGa -3'
miRNA:   3'- ucgCC-CGUGgGCGGCUGG----GCUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 25945 0.66 0.232812
Target:  5'- cAGCGGuGCcuUCUGCuCGAUCCGGCaCGGg -3'
miRNA:   3'- -UCGCC-CGu-GGGCG-GCUGGGCUG-GCCg -5'
7266 3' -65.8 NC_001900.1 + 5417 0.66 0.232245
Target:  5'- cAGCGGGgACgCCuaCGACacccgaaCCGACCucGGCa -3'
miRNA:   3'- -UCGCCCgUG-GGcgGCUG-------GGCUGG--CCG- -5'
7266 3' -65.8 NC_001900.1 + 9020 0.66 0.227192
Target:  5'- -cCGGGUugCCGUCGugCCaGACCucGCc -3'
miRNA:   3'- ucGCCCGugGGCGGCugGG-CUGGc-CG- -5'
7266 3' -65.8 NC_001900.1 + 6330 0.66 0.227192
Target:  5'- cGCGGcuGCGCCCGCguCGAUCCcGCCccagaucagGGCg -3'
miRNA:   3'- uCGCC--CGUGGGCG--GCUGGGcUGG---------CCG- -5'
7266 3' -65.8 NC_001900.1 + 12749 0.66 0.225529
Target:  5'- cAGCGGGCgACCguucugguccuucgCGCCGuuCagGAUCGGCu -3'
miRNA:   3'- -UCGCCCG-UGG--------------GCGGCugGg-CUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.