miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 3' -59.1 NC_001900.1 + 17052 0.65 0.556455
Target:  5'- gCCGaGUGCgaccacaCCGgCUCCAgCGcCGAACGCu -3'
miRNA:   3'- -GGC-CAUG-------GGCgGAGGU-GCcGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 9788 0.66 0.547114
Target:  5'- cCCGGUGguCCCGCUUCCGaacCGGACccgGCu -3'
miRNA:   3'- -GGCCAU--GGGCGGAGGUgccGCUUG---CG- -5'
7269 3' -59.1 NC_001900.1 + 48141 0.66 0.547114
Target:  5'- aUCGGacuUCCGCCUCacccGCGAAUGCu -3'
miRNA:   3'- -GGCCau-GGGCGGAGgugcCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 3060 0.66 0.536794
Target:  5'- gCGGgcACCCGCCgacCCGacCGGCGGgaaggucguugACGUg -3'
miRNA:   3'- gGCCa-UGGGCGGa--GGU--GCCGCU-----------UGCG- -5'
7269 3' -59.1 NC_001900.1 + 5840 0.66 0.536794
Target:  5'- gCGGUucAUCCGCgagaUCCACGG--GGCGCu -3'
miRNA:   3'- gGCCA--UGGGCGg---AGGUGCCgcUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 12442 0.66 0.526543
Target:  5'- -aGGUGgcgaCCGCCUUCGCgauGGCGuucgacGGCGCg -3'
miRNA:   3'- ggCCAUg---GGCGGAGGUG---CCGC------UUGCG- -5'
7269 3' -59.1 NC_001900.1 + 29628 0.66 0.526543
Target:  5'- cCCGuUGCgcuUCGCCUCguUGGCGAGCuuGCg -3'
miRNA:   3'- -GGCcAUG---GGCGGAGguGCCGCUUG--CG- -5'
7269 3' -59.1 NC_001900.1 + 20413 0.66 0.526543
Target:  5'- cCCGGUAgugguccaucauCCCG-CUCCAU--CGAGCGCc -3'
miRNA:   3'- -GGCCAU------------GGGCgGAGGUGccGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 41752 0.66 0.525522
Target:  5'- -aGGUacACCCGaCCaagCCcagaccgGCGGCGAGgGCg -3'
miRNA:   3'- ggCCA--UGGGC-GGa--GG-------UGCCGCUUgCG- -5'
7269 3' -59.1 NC_001900.1 + 16898 0.66 0.525522
Target:  5'- cCCaGGUGCUgaaccugagacgaCGCCUUCGCGGCGucaucaccaaGACuGCu -3'
miRNA:   3'- -GG-CCAUGG-------------GCGGAGGUGCCGC----------UUG-CG- -5'
7269 3' -59.1 NC_001900.1 + 3614 0.66 0.506269
Target:  5'- gCCGuUACCgGCCccgagcgCCGCGuCGAugGCg -3'
miRNA:   3'- -GGCcAUGGgCGGa------GGUGCcGCUugCG- -5'
7269 3' -59.1 NC_001900.1 + 38595 0.66 0.506269
Target:  5'- uUCGGcUugCCGUCgUCCagACGGCGAuaccggauCGCu -3'
miRNA:   3'- -GGCC-AugGGCGG-AGG--UGCCGCUu-------GCG- -5'
7269 3' -59.1 NC_001900.1 + 4986 0.66 0.506269
Target:  5'- cCCGGcaUGCUCGUcgggCUCCagcacgGCGGCGGGgGCc -3'
miRNA:   3'- -GGCC--AUGGGCG----GAGG------UGCCGCUUgCG- -5'
7269 3' -59.1 NC_001900.1 + 43294 0.66 0.506269
Target:  5'- cCCGG-ACCaCGaCCUCCACcucGCGGA-GCu -3'
miRNA:   3'- -GGCCaUGG-GC-GGAGGUGc--CGCUUgCG- -5'
7269 3' -59.1 NC_001900.1 + 35657 0.66 0.506269
Target:  5'- aCGGUGuCUCGuUCUCCAagGGCGAuucggcugACGCc -3'
miRNA:   3'- gGCCAU-GGGC-GGAGGUg-CCGCU--------UGCG- -5'
7269 3' -59.1 NC_001900.1 + 29840 0.66 0.506269
Target:  5'- aCGGUGaacuUCgGCCgggUCUACGGCGGugGg -3'
miRNA:   3'- gGCCAU----GGgCGG---AGGUGCCGCUugCg -5'
7269 3' -59.1 NC_001900.1 + 10428 0.67 0.496257
Target:  5'- gCGGcgUCaGCCUUCGCGGCGuACGUc -3'
miRNA:   3'- gGCCauGGgCGGAGGUGCCGCuUGCG- -5'
7269 3' -59.1 NC_001900.1 + 21326 0.67 0.496257
Target:  5'- aCCG--ACCgCGCCgagCACGGCGAGCugGCu -3'
miRNA:   3'- -GGCcaUGG-GCGGag-GUGCCGCUUG--CG- -5'
7269 3' -59.1 NC_001900.1 + 37068 0.67 0.496257
Target:  5'- cCCGGa---CGCCgCCACGGUGGcCGUg -3'
miRNA:   3'- -GGCCauggGCGGaGGUGCCGCUuGCG- -5'
7269 3' -59.1 NC_001900.1 + 21632 0.67 0.496257
Target:  5'- aUCGGUGCUCGgCUaCC-CGGuCGAGCa- -3'
miRNA:   3'- -GGCCAUGGGCgGA-GGuGCC-GCUUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.