miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7271 5' -57.6 NC_001900.1 + 23888 0.66 0.542745
Target:  5'- gCCAGcGCCGAUa--GCCGACCgGAGc -3'
miRNA:   3'- aGGUC-CGGCUGacgUGGUUGGgCUUa -5'
7271 5' -57.6 NC_001900.1 + 35928 0.66 0.542745
Target:  5'- gCCuGGCuCGGagaUGUACCGAgCCGAGg -3'
miRNA:   3'- aGGuCCG-GCUg--ACGUGGUUgGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 21232 0.66 0.542745
Target:  5'- cCCGGaGCgGACUGUccACCGGCCagGAAg -3'
miRNA:   3'- aGGUC-CGgCUGACG--UGGUUGGg-CUUa -5'
7271 5' -57.6 NC_001900.1 + 38730 0.66 0.532031
Target:  5'- cCCAGGCCGAacgGUagaACCugaugAACCUGAAg -3'
miRNA:   3'- aGGUCCGGCUga-CG---UGG-----UUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 27861 0.66 0.532031
Target:  5'- gUCCuuGacgaCGACUGCACCAACCUu--- -3'
miRNA:   3'- -AGGucCg---GCUGACGUGGUUGGGcuua -5'
7271 5' -57.6 NC_001900.1 + 40869 0.66 0.532031
Target:  5'- cCCuGGCUGacgaGCUGCACCGGucCCCGuAUg -3'
miRNA:   3'- aGGuCCGGC----UGACGUGGUU--GGGCuUA- -5'
7271 5' -57.6 NC_001900.1 + 30698 0.66 0.521396
Target:  5'- cUCCAgcgaguGGCCGAaccCACCGGcCCCGAAa -3'
miRNA:   3'- -AGGU------CCGGCUgacGUGGUU-GGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 34989 0.66 0.521396
Target:  5'- aCCaAGG-CGGCUGC-CCAGCCCu--- -3'
miRNA:   3'- aGG-UCCgGCUGACGuGGUUGGGcuua -5'
7271 5' -57.6 NC_001900.1 + 41164 0.66 0.510843
Target:  5'- gUCCAcGGCCGcagGuCACCGGCCUGGc- -3'
miRNA:   3'- -AGGU-CCGGCugaC-GUGGUUGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 17058 0.66 0.510843
Target:  5'- gUCCAuGCCGAgUGCGaccacaccggcuCCAGCgCCGAAc -3'
miRNA:   3'- -AGGUcCGGCUgACGU------------GGUUG-GGCUUa -5'
7271 5' -57.6 NC_001900.1 + 24801 0.67 0.490014
Target:  5'- aCCAGGCC--CUGCgguaccACCAGCgCCGAu- -3'
miRNA:   3'- aGGUCCGGcuGACG------UGGUUG-GGCUua -5'
7271 5' -57.6 NC_001900.1 + 48478 0.67 0.490014
Target:  5'- aCCAcGGCCGGgUaGCugUcaAGCCCGAAUu -3'
miRNA:   3'- aGGU-CCGGCUgA-CGugG--UUGGGCUUA- -5'
7271 5' -57.6 NC_001900.1 + 3619 0.67 0.479749
Target:  5'- aCCAGGCCGu---UACCGGcCCCGAGc -3'
miRNA:   3'- aGGUCCGGCugacGUGGUU-GGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 24020 0.67 0.46959
Target:  5'- aCCAgcgcGGCCGAagcccGCGCCAACCuCGGu- -3'
miRNA:   3'- aGGU----CCGGCUga---CGUGGUUGG-GCUua -5'
7271 5' -57.6 NC_001900.1 + 44709 0.67 0.459542
Target:  5'- gCCAGGCCGcuggccGCUGCcacACCuugucGAUCCGAGc -3'
miRNA:   3'- aGGUCCGGC------UGACG---UGG-----UUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 9697 0.67 0.449609
Target:  5'- gCCuuGGCCGGCcG-ACCGAUCCGAGg -3'
miRNA:   3'- aGGu-CCGGCUGaCgUGGUUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 34388 0.67 0.449609
Target:  5'- gCCGGGaagaCCGACUaCAUCGACCUGAu- -3'
miRNA:   3'- aGGUCC----GGCUGAcGUGGUUGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 6314 0.67 0.439796
Target:  5'- aCCuGGUCGGCgcagccGCACCGGCCaCGGc- -3'
miRNA:   3'- aGGuCCGGCUGa-----CGUGGUUGG-GCUua -5'
7271 5' -57.6 NC_001900.1 + 37423 0.67 0.439796
Target:  5'- gUCGGGCUGGgUGuCGCCGaugaACCCGAc- -3'
miRNA:   3'- aGGUCCGGCUgAC-GUGGU----UGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 10513 0.67 0.439796
Target:  5'- gCUGGGCaCGAUggucGaCGCCGACCCGAc- -3'
miRNA:   3'- aGGUCCG-GCUGa---C-GUGGUUGGGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.