miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7311 5' -55.3 NC_001900.1 + 24607 0.66 0.734297
Target:  5'- gUGCCGGgAUGUUGuAGGuguacgcgccgaccGCCGUGACCg -3'
miRNA:   3'- aGCGGCCaUGUAGU-UCC--------------UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 1771 0.66 0.726924
Target:  5'- -aGCCcgaGGUGCGUgAccGGGucACUGUGACCa -3'
miRNA:   3'- agCGG---CCAUGUAgU--UCC--UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 35770 0.66 0.726924
Target:  5'- cCGCCGacGUACugcUCcAGGucgucCUGCGACCa -3'
miRNA:   3'- aGCGGC--CAUGu--AGuUCCu----GGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 22493 0.66 0.726924
Target:  5'- gCGCUGa-ACAUCGAGcGCCGCGAa- -3'
miRNA:   3'- aGCGGCcaUGUAGUUCcUGGCGCUgg -5'
7311 5' -55.3 NC_001900.1 + 19701 0.66 0.726924
Target:  5'- cCGCCGGga-GUCGAGaucccgugggaGACCGCu-CCg -3'
miRNA:   3'- aGCGGCCaugUAGUUC-----------CUGGCGcuGG- -5'
7311 5' -55.3 NC_001900.1 + 16992 0.66 0.716313
Target:  5'- gUCGCacuCGGcauggacgGCAUCAAGGcggcaGCCGaGACCa -3'
miRNA:   3'- -AGCG---GCCa-------UGUAGUUCC-----UGGCgCUGG- -5'
7311 5' -55.3 NC_001900.1 + 40140 0.66 0.705619
Target:  5'- -aGCCGcGUcCAgc-AGGACCGCuGCCg -3'
miRNA:   3'- agCGGC-CAuGUaguUCCUGGCGcUGG- -5'
7311 5' -55.3 NC_001900.1 + 34215 0.66 0.705619
Target:  5'- gCGCCGGuUGCGauccagaaccucUCGGcucuucGGAUCaGCGACCg -3'
miRNA:   3'- aGCGGCC-AUGU------------AGUU------CCUGG-CGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 10176 0.66 0.705619
Target:  5'- cCGCUGaGgcCAUC-AGGGCCGCagagaGCCg -3'
miRNA:   3'- aGCGGC-CauGUAGuUCCUGGCGc----UGG- -5'
7311 5' -55.3 NC_001900.1 + 1359 0.66 0.705619
Target:  5'- gCGCUGGcg-GUCGccGcCCGCGACCa -3'
miRNA:   3'- aGCGGCCaugUAGUucCuGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 29567 0.66 0.704545
Target:  5'- gCGCCGaGUACGUcCGAGaGcgguccaccggcaGCCGcCGGCCc -3'
miRNA:   3'- aGCGGC-CAUGUA-GUUC-C-------------UGGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 9868 0.66 0.702396
Target:  5'- -aGCCGGguccGguUCGgaagcgggaccaccGGGACCGCG-CCg -3'
miRNA:   3'- agCGGCCa---UguAGU--------------UCCUGGCGCuGG- -5'
7311 5' -55.3 NC_001900.1 + 28050 0.66 0.694854
Target:  5'- cCGCCGGgggcgGCGUCAAcGugC-CGAUCu -3'
miRNA:   3'- aGCGGCCa----UGUAGUUcCugGcGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 6390 0.66 0.691612
Target:  5'- cUCcCCGGUGgAUCAggucaccaGGGGCgucgagcaggugcuCGCGGCCa -3'
miRNA:   3'- -AGcGGCCAUgUAGU--------UCCUG--------------GCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 26679 0.66 0.685113
Target:  5'- -gGaCCGGauccccgagaGGGGGCCGCGACCu -3'
miRNA:   3'- agC-GGCCauguag----UUCCUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 40301 0.66 0.684028
Target:  5'- -gGCCGGUcgGCAgUGAGccGCUGCGGCCg -3'
miRNA:   3'- agCGGCCA--UGUaGUUCc-UGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 5802 0.66 0.682943
Target:  5'- gUCGgCGGU-CAUCGAGGuuggugagcccGCCGUugauccggcgcguGACCg -3'
miRNA:   3'- -AGCgGCCAuGUAGUUCC-----------UGGCG-------------CUGG- -5'
7311 5' -55.3 NC_001900.1 + 6414 0.67 0.673154
Target:  5'- cUGCUGGUugAcCuugacAGcGGCCGUGGCCg -3'
miRNA:   3'- aGCGGCCAugUaGu----UC-CUGGCGCUGG- -5'
7311 5' -55.3 NC_001900.1 + 25537 0.67 0.662241
Target:  5'- aCGCUGGcgGC-UCAGgccGGugCGaCGACCa -3'
miRNA:   3'- aGCGGCCa-UGuAGUU---CCugGC-GCUGG- -5'
7311 5' -55.3 NC_001900.1 + 42525 0.67 0.6513
Target:  5'- -gGaCCGGcGCAUaCAAGGACCaacUGACCu -3'
miRNA:   3'- agC-GGCCaUGUA-GUUCCUGGc--GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.