miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7347 3' -55.3 NC_001900.1 + 27998 0.66 0.72149
Target:  5'- cGAaCA-CGACGUGCgGAGCCcucggGCUGg -3'
miRNA:   3'- aCUaGUgGCUGCACGgCUUGG-----CGACg -5'
7347 3' -55.3 NC_001900.1 + 44406 0.66 0.72149
Target:  5'- cGAUCGCUGGCGUaCCGu-CCGggGUc -3'
miRNA:   3'- aCUAGUGGCUGCAcGGCuuGGCgaCG- -5'
7347 3' -55.3 NC_001900.1 + 37400 0.66 0.720422
Target:  5'- aGGUCGCCGAUGUGgaCG-ACCucgucggGCUGg -3'
miRNA:   3'- aCUAGUGGCUGCACg-GCuUGG-------CGACg -5'
7347 3' -55.3 NC_001900.1 + 43480 0.66 0.710767
Target:  5'- gGAUCgGCCGGCcaGCuCGGugcGCCGcCUGCu -3'
miRNA:   3'- aCUAG-UGGCUGcaCG-GCU---UGGC-GACG- -5'
7347 3' -55.3 NC_001900.1 + 42736 0.66 0.699966
Target:  5'- uUGA-CAgCGGcCGUgGCCGGugCgGCUGCg -3'
miRNA:   3'- -ACUaGUgGCU-GCA-CGGCUugG-CGACG- -5'
7347 3' -55.3 NC_001900.1 + 44921 0.66 0.699966
Target:  5'- gGGUCACCGcCG-GCCGcuUCGCcggucgGCa -3'
miRNA:   3'- aCUAGUGGCuGCaCGGCuuGGCGa-----CG- -5'
7347 3' -55.3 NC_001900.1 + 46133 0.66 0.698883
Target:  5'- -cAUCGCCGAgcUG-GUCGAugaccagGCCGUUGCg -3'
miRNA:   3'- acUAGUGGCU--GCaCGGCU-------UGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 42775 0.66 0.689099
Target:  5'- uUGAgagCGCCagcgacGAUGUcGCCGAuguucGCgGCUGCg -3'
miRNA:   3'- -ACUa--GUGG------CUGCA-CGGCU-----UGgCGACG- -5'
7347 3' -55.3 NC_001900.1 + 2226 0.66 0.689099
Target:  5'- aGuUC-CCGACG-GCCGug-CGCUGCc -3'
miRNA:   3'- aCuAGuGGCUGCaCGGCuugGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 9077 0.66 0.689099
Target:  5'- aGA-UACCGGCGagaaGCUGAGCUuccuuggaauGCUGCg -3'
miRNA:   3'- aCUaGUGGCUGCa---CGGCUUGG----------CGACG- -5'
7347 3' -55.3 NC_001900.1 + 15029 0.66 0.678177
Target:  5'- -cGUCGCCGAa--GCaGGcACCGCUGCa -3'
miRNA:   3'- acUAGUGGCUgcaCGgCU-UGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 19676 0.66 0.678177
Target:  5'- aGAUCGCuCGACugaugGCCGAGgagauggguCCGgUGCu -3'
miRNA:   3'- aCUAGUG-GCUGca---CGGCUU---------GGCgACG- -5'
7347 3' -55.3 NC_001900.1 + 37085 0.66 0.667211
Target:  5'- gGGUCACCGuugaGCGgcaguuccUGCCGAccACCGaaGCc -3'
miRNA:   3'- aCUAGUGGC----UGC--------ACGGCU--UGGCgaCG- -5'
7347 3' -55.3 NC_001900.1 + 18584 0.66 0.667211
Target:  5'- cUGGUgC-CCGACGUgaGCCG-GCCGUUGg -3'
miRNA:   3'- -ACUA-GuGGCUGCA--CGGCuUGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 46985 0.66 0.667211
Target:  5'- --uUCugUG-CGUGCagguaGACCGCUGCg -3'
miRNA:   3'- acuAGugGCuGCACGgc---UUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 20217 0.67 0.656212
Target:  5'- cGAg-ACCGGCGUaGCCa---CGCUGCa -3'
miRNA:   3'- aCUagUGGCUGCA-CGGcuugGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 27894 0.67 0.656212
Target:  5'- --uUCAcaguCCGAUc-GCUGGGCCGCUGCc -3'
miRNA:   3'- acuAGU----GGCUGcaCGGCUUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 25767 0.67 0.656212
Target:  5'- cGAcCGCCGugGUGuuGAcUCGCUc- -3'
miRNA:   3'- aCUaGUGGCugCACggCUuGGCGAcg -5'
7347 3' -55.3 NC_001900.1 + 1353 0.67 0.656212
Target:  5'- gUGGUCAacgucCCGACcu-CCGAgAUCGCUGCa -3'
miRNA:   3'- -ACUAGU-----GGCUGcacGGCU-UGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 25742 0.67 0.656212
Target:  5'- --cUCGCCGACGcggGCCGcGCCcCgGCg -3'
miRNA:   3'- acuAGUGGCUGCa--CGGCuUGGcGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.