miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7353 3' -52.7 NC_001900.1 + 5405 0.66 0.835339
Target:  5'- aAGAAGgauugggaucccaACGACccgaagcugaAGuCGCCGUACGCGCc -3'
miRNA:   3'- gUCUUCa------------UGCUG----------UC-GUGGCGUGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 32087 0.66 0.829829
Target:  5'- --cGAGUGCGACcacaccggcuccAGCGCCGa--ACGCu -3'
miRNA:   3'- gucUUCAUGCUG------------UCGUGGCgugUGCG- -5'
7353 3' -52.7 NC_001900.1 + 48380 0.66 0.829829
Target:  5'- cCAGAGGcugaaaucggGCGucagaGCAGCuccaACCGCuuGCACGCg -3'
miRNA:   3'- -GUCUUCa---------UGC-----UGUCG----UGGCG--UGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 26716 0.66 0.829829
Target:  5'- aCGGAAGcaacGCaGGCAGUACCGaacagaACACGg -3'
miRNA:   3'- -GUCUUCa---UG-CUGUCGUGGCg-----UGUGCg -5'
7353 3' -52.7 NC_001900.1 + 32213 0.66 0.829829
Target:  5'- cCAGcGGUucuugAUGAC-GUACCGC-CACGCc -3'
miRNA:   3'- -GUCuUCA-----UGCUGuCGUGGCGuGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 5967 0.66 0.829829
Target:  5'- aAGAAcgGCGACGGCAUgGgGC-CGCc -3'
miRNA:   3'- gUCUUcaUGCUGUCGUGgCgUGuGCG- -5'
7353 3' -52.7 NC_001900.1 + 17357 0.66 0.814755
Target:  5'- gCAGGAGUucgccaacgguuucaACGACauGGUcaACCGCGuCACGUc -3'
miRNA:   3'- -GUCUUCA---------------UGCUG--UCG--UGGCGU-GUGCG- -5'
7353 3' -52.7 NC_001900.1 + 33464 0.66 0.80114
Target:  5'- -----aUGgGGCAuGCGCCGUugGCGCa -3'
miRNA:   3'- gucuucAUgCUGU-CGUGGCGugUGCG- -5'
7353 3' -52.7 NC_001900.1 + 7050 0.66 0.80114
Target:  5'- uGGAgcAGUACGGCuucgAGguCCGCGacUACGCc -3'
miRNA:   3'- gUCU--UCAUGCUG----UCguGGCGU--GUGCG- -5'
7353 3' -52.7 NC_001900.1 + 47694 0.66 0.80114
Target:  5'- aCGGuGAGUGCuggucgcgGGCGGCgACCGCcaGCGCGUu -3'
miRNA:   3'- -GUC-UUCAUG--------CUGUCG-UGGCG--UGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 16266 0.67 0.781066
Target:  5'- -cGAGGUugGGaugAGgACCGgUACGCGCu -3'
miRNA:   3'- guCUUCAugCUg--UCgUGGC-GUGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 21981 0.67 0.781066
Target:  5'- uGGAAGUGCGGCuuucGGCAugUCG-ACugGCu -3'
miRNA:   3'- gUCUUCAUGCUG----UCGU--GGCgUGugCG- -5'
7353 3' -52.7 NC_001900.1 + 5574 0.67 0.781066
Target:  5'- -cGGAGcagGCGGC-GCACCGaGCugGCc -3'
miRNA:   3'- guCUUCa--UGCUGuCGUGGCgUGugCG- -5'
7353 3' -52.7 NC_001900.1 + 32422 0.67 0.781066
Target:  5'- -cGGAGccCGACAGCuCCGUAaACGCc -3'
miRNA:   3'- guCUUCauGCUGUCGuGGCGUgUGCG- -5'
7353 3' -52.7 NC_001900.1 + 21555 0.67 0.781066
Target:  5'- aAGguGUcugACG-CGGCACCGUACAucuuCGCa -3'
miRNA:   3'- gUCuuCA---UGCuGUCGUGGCGUGU----GCG- -5'
7353 3' -52.7 NC_001900.1 + 25038 0.67 0.770779
Target:  5'- -cGAGGUugGcGCgGGCuucgGCCGCGCugGUa -3'
miRNA:   3'- guCUUCAugC-UG-UCG----UGGCGUGugCG- -5'
7353 3' -52.7 NC_001900.1 + 8307 0.67 0.749765
Target:  5'- uGGuGGUucACGGCGGCGCuCGCG-GCGCu -3'
miRNA:   3'- gUCuUCA--UGCUGUCGUG-GCGUgUGCG- -5'
7353 3' -52.7 NC_001900.1 + 4428 0.67 0.749765
Target:  5'- uGGGAGUccuACGGCA-UGCCGCuuACGCu -3'
miRNA:   3'- gUCUUCA---UGCUGUcGUGGCGugUGCG- -5'
7353 3' -52.7 NC_001900.1 + 44687 0.67 0.739064
Target:  5'- uGGAacgcGGUccccuGCGGCAGCcagGCCGCugGcCGCu -3'
miRNA:   3'- gUCU----UCA-----UGCUGUCG---UGGCGugU-GCG- -5'
7353 3' -52.7 NC_001900.1 + 1337 0.67 0.739064
Target:  5'- gCAGAAgcGUGCGGC-GUucaaCGCGCugGCg -3'
miRNA:   3'- -GUCUU--CAUGCUGuCGug--GCGUGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.