miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7356 5' -60.2 NC_001900.1 + 43929 0.66 0.442503
Target:  5'- uGCGCCGUCGUaGAGgaaCACCcCCAcGCc -3'
miRNA:   3'- uCGCGGCGGCA-CUUg--GUGGuGGUcCG- -5'
7356 5' -60.2 NC_001900.1 + 2599 0.66 0.442503
Target:  5'- cGGCGauuaCGCCGcgugGGACUgcucacggugcgGCCAUgAGGCg -3'
miRNA:   3'- -UCGCg---GCGGCa---CUUGG------------UGGUGgUCCG- -5'
7356 5' -60.2 NC_001900.1 + 16817 0.66 0.442503
Target:  5'- -uCGCCgaugGUCGUcacGGGCaACCACCGGGCg -3'
miRNA:   3'- ucGCGG----CGGCA---CUUGgUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 3393 0.66 0.433039
Target:  5'- aGGCcgGCCgGCCGUGAGCgugugCGCCGugaAGGCa -3'
miRNA:   3'- -UCG--CGG-CGGCACUUG-----GUGGUgg-UCCG- -5'
7356 5' -60.2 NC_001900.1 + 37091 0.66 0.432099
Target:  5'- uGCGUCGagauccagcCCG-GAGCCACCuuguagaACuCAGGCa -3'
miRNA:   3'- uCGCGGC---------GGCaCUUGGUGG-------UG-GUCCG- -5'
7356 5' -60.2 NC_001900.1 + 12913 0.66 0.423693
Target:  5'- aAGCGa-GCCGUGAAgUCGCuCACCGaGCa -3'
miRNA:   3'- -UCGCggCGGCACUU-GGUG-GUGGUcCG- -5'
7356 5' -60.2 NC_001900.1 + 24152 0.66 0.423693
Target:  5'- uAGCGCCGCCGUcguaGGuCCGgucucgguaCACCAugucGGCa -3'
miRNA:   3'- -UCGCGGCGGCA----CUuGGUg--------GUGGU----CCG- -5'
7356 5' -60.2 NC_001900.1 + 14143 0.66 0.423693
Target:  5'- gAGCGCgucuaCGaCGUGucCCGCguCCGGGCg -3'
miRNA:   3'- -UCGCG-----GCgGCACuuGGUGguGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 4377 0.66 0.414469
Target:  5'- uGGCuGCCGCaggGGACCGCguuccacgcuguCGCCgAGGCg -3'
miRNA:   3'- -UCG-CGGCGgcaCUUGGUG------------GUGG-UCCG- -5'
7356 5' -60.2 NC_001900.1 + 39447 0.66 0.414469
Target:  5'- uGGCGCa-CCGUGGGCCGggaUACUuGGCg -3'
miRNA:   3'- -UCGCGgcGGCACUUGGUg--GUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 46620 0.66 0.413554
Target:  5'- cGCaGCCgggGCCGUcGACCucacacaGCCACCcGGCa -3'
miRNA:   3'- uCG-CGG---CGGCAcUUGG-------UGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 47863 0.66 0.40537
Target:  5'- uGCGuuGCCGgu-GCCuaaACCGCCccGGCc -3'
miRNA:   3'- uCGCggCGGCacuUGG---UGGUGGu-CCG- -5'
7356 5' -60.2 NC_001900.1 + 43424 0.66 0.40537
Target:  5'- gGGCGCuCGaCGgu--CCAgUACCAGGCg -3'
miRNA:   3'- -UCGCG-GCgGCacuuGGUgGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 14084 0.66 0.402665
Target:  5'- gGGCaGCCGCCuUGGucgaccugaucgacAcCCACUACCGGGa -3'
miRNA:   3'- -UCG-CGGCGGcACU--------------U-GGUGGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 20900 0.66 0.396398
Target:  5'- aGGCGCUGCUGgaGAACCAaggGCUcaAGGCc -3'
miRNA:   3'- -UCGCGGCGGCa-CUUGGUgg-UGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 25466 0.66 0.396398
Target:  5'- cGCaCCgGCC-UGAGCCGCCAgCguGGCu -3'
miRNA:   3'- uCGcGG-CGGcACUUGGUGGU-GguCCG- -5'
7356 5' -60.2 NC_001900.1 + 28123 0.67 0.387554
Target:  5'- -aCGaCCGCCcggacgaacccgGUGAGCCaggaGCCGCCgaAGGCg -3'
miRNA:   3'- ucGC-GGCGG------------CACUUGG----UGGUGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 3398 0.67 0.387554
Target:  5'- cGCGCUGCaccagGUGua-CAUCACCGGGg -3'
miRNA:   3'- uCGCGGCGg----CACuugGUGGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 44068 0.67 0.378842
Target:  5'- -cCGCCGCCGUGcuggagcccgacGAgCAUgACCGGGg -3'
miRNA:   3'- ucGCGGCGGCAC------------UUgGUGgUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 1605 0.67 0.378842
Target:  5'- cGCGuCCGCUGacuUGAcaGCCACCGaaGGGUu -3'
miRNA:   3'- uCGC-GGCGGC---ACU--UGGUGGUggUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.