miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8076 3' -57.5 NC_001978.2 + 22696 0.68 0.414545
Target:  5'- aGUCGGCaaccCGCUACCGgGCGc-GUCGCu -3'
miRNA:   3'- -CAGCUGc---GCGGUGGCgCGUacUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 19931 0.68 0.433572
Target:  5'- cGUCGGCccccggcacgGCGCCAauGCGCAc-GUCGCc -3'
miRNA:   3'- -CAGCUG----------CGCGGUggCGCGUacUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 5369 1.12 0.000292
Target:  5'- gGUCGACGCGCCACCGCGCAUGAUCGCg -3'
miRNA:   3'- -CAGCUGCGCGGUGGCGCGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 19718 0.68 0.386991
Target:  5'- uGUCGAagGCGUCcUUGCGCG-GGUCGCu -3'
miRNA:   3'- -CAGCUg-CGCGGuGGCGCGUaCUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 4970 0.67 0.443274
Target:  5'- cUCG-CGCGCCucaaaguUgGCGCucagaGUGGUCGCg -3'
miRNA:   3'- cAGCuGCGCGGu------GgCGCG-----UACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 39900 0.78 0.084979
Target:  5'- cGUCGuACGCGCCuGCCGCGCGgucuUCGUa -3'
miRNA:   3'- -CAGC-UGCGCGG-UGGCGCGUacu-AGCG- -5'
8076 3' -57.5 NC_001978.2 + 34327 0.67 0.452109
Target:  5'- -gCGugGCuccggcaagcuccGCCgACgGCGCAUGAcguaUCGCg -3'
miRNA:   3'- caGCugCG-------------CGG-UGgCGCGUACU----AGCG- -5'
8076 3' -57.5 NC_001978.2 + 9960 0.67 0.453096
Target:  5'- aGUCGACcaacccaGUCugaagACCGCGCGUGAaCGCc -3'
miRNA:   3'- -CAGCUGcg-----CGG-----UGGCGCGUACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 38632 0.68 0.423995
Target:  5'- -cCGACGUGCC-CgGCGCu---UCGCu -3'
miRNA:   3'- caGCUGCGCGGuGgCGCGuacuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 28833 0.66 0.524884
Target:  5'- uGUUGGCaGCGCuCGCCGa-CGUGAagCGCa -3'
miRNA:   3'- -CAGCUG-CGCG-GUGGCgcGUACUa-GCG- -5'
8076 3' -57.5 NC_001978.2 + 32189 0.68 0.423995
Target:  5'- --gGACGCGCgCACCGCuGaggGAUgGCg -3'
miRNA:   3'- cagCUGCGCG-GUGGCG-CguaCUAgCG- -5'
8076 3' -57.5 NC_001978.2 + 37865 0.68 0.405227
Target:  5'- uGUCGGCggggGCGCCGucccguacaacgUCGCGCGUGAgCGg -3'
miRNA:   3'- -CAGCUG----CGCGGU------------GGCGCGUACUaGCg -5'
8076 3' -57.5 NC_001978.2 + 33539 0.68 0.405227
Target:  5'- cGUUGcCGCuGCCAUUGCGgGUG-UCGCc -3'
miRNA:   3'- -CAGCuGCG-CGGUGGCGCgUACuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 24490 0.68 0.39513
Target:  5'- cUCGACGCGCUgagcaacgccauaACCcgggGCGCGUcGGUUGUg -3'
miRNA:   3'- cAGCUGCGCGG-------------UGG----CGCGUA-CUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 3762 0.69 0.343828
Target:  5'- uUUGGCGUGCCGCCGCaCcUGAUuucggaCGCu -3'
miRNA:   3'- cAGCUGCGCGGUGGCGcGuACUA------GCG- -5'
8076 3' -57.5 NC_001978.2 + 27051 0.66 0.503882
Target:  5'- uUCG-UGCGCUACuuCGCGCcgGAagagCGCg -3'
miRNA:   3'- cAGCuGCGCGGUG--GCGCGuaCUa---GCG- -5'
8076 3' -57.5 NC_001978.2 + 16675 0.66 0.503882
Target:  5'- -cCGGCGCGCuUGCCGCuaugcggucaacGCAUGucggCGCc -3'
miRNA:   3'- caGCUGCGCG-GUGGCG------------CGUACua--GCG- -5'
8076 3' -57.5 NC_001978.2 + 35329 0.66 0.503882
Target:  5'- -gCGACgGCGCUugU-UGCGUGAUCGUu -3'
miRNA:   3'- caGCUG-CGCGGugGcGCGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 21237 0.66 0.513289
Target:  5'- uUCG-CGCuGCCGCCGaCGCGuucgaccuugaccUGAgCGCg -3'
miRNA:   3'- cAGCuGCG-CGGUGGC-GCGU-------------ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 27448 0.66 0.514339
Target:  5'- -cUGACGCGCCuGCCGcCGCuaccGGUCccgGCa -3'
miRNA:   3'- caGCUGCGCGG-UGGC-GCGua--CUAG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.