miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8077 3' -50.4 NC_001978.2 + 19942 0.66 0.913686
Target:  5'- cGCgUGAA--UCGCGUCGGCCcccggcACGGc -3'
miRNA:   3'- aCG-ACUUgaAGCGCAGUUGGcu----UGCC- -5'
8077 3' -50.4 NC_001978.2 + 31804 0.66 0.906924
Target:  5'- cGaCUGGGCggcUCGCGUCGGCaaguuCGGu -3'
miRNA:   3'- aC-GACUUGa--AGCGCAGUUGgcuu-GCC- -5'
8077 3' -50.4 NC_001978.2 + 18134 0.66 0.906924
Target:  5'- cGCUGccACUUCGCGUaagaAGCCuuguCGGc -3'
miRNA:   3'- aCGACu-UGAAGCGCAg---UUGGcuu-GCC- -5'
8077 3' -50.4 NC_001978.2 + 28720 0.66 0.892513
Target:  5'- gUGUUGAugUUCGgGUgAAuacgcCCGuGCGGa -3'
miRNA:   3'- -ACGACUugAAGCgCAgUU-----GGCuUGCC- -5'
8077 3' -50.4 NC_001978.2 + 11293 0.66 0.892513
Target:  5'- cGCUGAACcaa-CGUCAgaucagacgACCGAACGu -3'
miRNA:   3'- aCGACUUGaagcGCAGU---------UGGCUUGCc -5'
8077 3' -50.4 NC_001978.2 + 24994 0.66 0.884872
Target:  5'- cGCUGAcCUUCGguccgaagccCGcCGACUGAGcCGGg -3'
miRNA:   3'- aCGACUuGAAGC----------GCaGUUGGCUU-GCC- -5'
8077 3' -50.4 NC_001978.2 + 9144 0.66 0.884872
Target:  5'- aGCcGGAg-UCGCGccCAACUGGGCGGc -3'
miRNA:   3'- aCGaCUUgaAGCGCa-GUUGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 14507 0.66 0.884872
Target:  5'- cGCcGucCUcaGCGUCccAGCCGAACGGg -3'
miRNA:   3'- aCGaCuuGAagCGCAG--UUGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 16720 0.67 0.86875
Target:  5'- cGCUGccCaUUGCGUCGACCGuGCu- -3'
miRNA:   3'- aCGACuuGaAGCGCAGUUGGCuUGcc -5'
8077 3' -50.4 NC_001978.2 + 5780 0.67 0.86875
Target:  5'- ---cGAACUUCGCGUUcuugcgguacGCCG-ACGGg -3'
miRNA:   3'- acgaCUUGAAGCGCAGu---------UGGCuUGCC- -5'
8077 3' -50.4 NC_001978.2 + 16412 0.67 0.860282
Target:  5'- cGUUGGcaaucggcaggcGCUUCGCGgag-UCGAGCGGg -3'
miRNA:   3'- aCGACU------------UGAAGCGCaguuGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 13202 0.67 0.860282
Target:  5'- gGCUGAAg--CGUGUCGGggucggcagcgUCGAGCGGc -3'
miRNA:   3'- aCGACUUgaaGCGCAGUU-----------GGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 25591 0.67 0.860282
Target:  5'- aGCgGAACgaccaugCGCGggAACCGGGCGa -3'
miRNA:   3'- aCGaCUUGaa-----GCGCagUUGGCUUGCc -5'
8077 3' -50.4 NC_001978.2 + 5925 0.67 0.851554
Target:  5'- cGCcGGuucGCUcCGUGUCGACCGuuCGGu -3'
miRNA:   3'- aCGaCU---UGAaGCGCAGUUGGCuuGCC- -5'
8077 3' -50.4 NC_001978.2 + 11080 0.67 0.842575
Target:  5'- gGC--GACUUCGCGccCAAUcgCGAACGGg -3'
miRNA:   3'- aCGacUUGAAGCGCa-GUUG--GCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 10706 0.67 0.842575
Target:  5'- aGCUGGgcgGCUUUGCGUCGucgcuugcuuCCGcuGugGGg -3'
miRNA:   3'- aCGACU---UGAAGCGCAGUu---------GGC--UugCC- -5'
8077 3' -50.4 NC_001978.2 + 647 0.67 0.842575
Target:  5'- uUGCUGAACgcgGCGUacaCGGCgCGggUGGc -3'
miRNA:   3'- -ACGACUUGaagCGCA---GUUG-GCuuGCC- -5'
8077 3' -50.4 NC_001978.2 + 34231 0.68 0.833354
Target:  5'- cGCUGAGCgcaaCGCGauacgUCAugcGCCGucgGCGGa -3'
miRNA:   3'- aCGACUUGaa--GCGC-----AGU---UGGCu--UGCC- -5'
8077 3' -50.4 NC_001978.2 + 23429 0.68 0.833354
Target:  5'- gGCUuuGACUUCGUGUCGcacGCCG-ACGa -3'
miRNA:   3'- aCGAc-UUGAAGCGCAGU---UGGCuUGCc -5'
8077 3' -50.4 NC_001978.2 + 25303 0.68 0.833354
Target:  5'- aGCUGAcgACgucgccCGUGUCAcaACCGGcACGGc -3'
miRNA:   3'- aCGACU--UGaa----GCGCAGU--UGGCU-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.