Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8077 | 3' | -50.4 | NC_001978.2 | + | 19942 | 0.66 | 0.913686 |
Target: 5'- cGCgUGAA--UCGCGUCGGCCcccggcACGGc -3' miRNA: 3'- aCG-ACUUgaAGCGCAGUUGGcu----UGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 31804 | 0.66 | 0.906924 |
Target: 5'- cGaCUGGGCggcUCGCGUCGGCaaguuCGGu -3' miRNA: 3'- aC-GACUUGa--AGCGCAGUUGgcuu-GCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 18134 | 0.66 | 0.906924 |
Target: 5'- cGCUGccACUUCGCGUaagaAGCCuuguCGGc -3' miRNA: 3'- aCGACu-UGAAGCGCAg---UUGGcuu-GCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 28720 | 0.66 | 0.892513 |
Target: 5'- gUGUUGAugUUCGgGUgAAuacgcCCGuGCGGa -3' miRNA: 3'- -ACGACUugAAGCgCAgUU-----GGCuUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 11293 | 0.66 | 0.892513 |
Target: 5'- cGCUGAACcaa-CGUCAgaucagacgACCGAACGu -3' miRNA: 3'- aCGACUUGaagcGCAGU---------UGGCUUGCc -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 24994 | 0.66 | 0.884872 |
Target: 5'- cGCUGAcCUUCGguccgaagccCGcCGACUGAGcCGGg -3' miRNA: 3'- aCGACUuGAAGC----------GCaGUUGGCUU-GCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 9144 | 0.66 | 0.884872 |
Target: 5'- aGCcGGAg-UCGCGccCAACUGGGCGGc -3' miRNA: 3'- aCGaCUUgaAGCGCa-GUUGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 14507 | 0.66 | 0.884872 |
Target: 5'- cGCcGucCUcaGCGUCccAGCCGAACGGg -3' miRNA: 3'- aCGaCuuGAagCGCAG--UUGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 16720 | 0.67 | 0.86875 |
Target: 5'- cGCUGccCaUUGCGUCGACCGuGCu- -3' miRNA: 3'- aCGACuuGaAGCGCAGUUGGCuUGcc -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 5780 | 0.67 | 0.86875 |
Target: 5'- ---cGAACUUCGCGUUcuugcgguacGCCG-ACGGg -3' miRNA: 3'- acgaCUUGAAGCGCAGu---------UGGCuUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 16412 | 0.67 | 0.860282 |
Target: 5'- cGUUGGcaaucggcaggcGCUUCGCGgag-UCGAGCGGg -3' miRNA: 3'- aCGACU------------UGAAGCGCaguuGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 13202 | 0.67 | 0.860282 |
Target: 5'- gGCUGAAg--CGUGUCGGggucggcagcgUCGAGCGGc -3' miRNA: 3'- aCGACUUgaaGCGCAGUU-----------GGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 25591 | 0.67 | 0.860282 |
Target: 5'- aGCgGAACgaccaugCGCGggAACCGGGCGa -3' miRNA: 3'- aCGaCUUGaa-----GCGCagUUGGCUUGCc -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 5925 | 0.67 | 0.851554 |
Target: 5'- cGCcGGuucGCUcCGUGUCGACCGuuCGGu -3' miRNA: 3'- aCGaCU---UGAaGCGCAGUUGGCuuGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 11080 | 0.67 | 0.842575 |
Target: 5'- gGC--GACUUCGCGccCAAUcgCGAACGGg -3' miRNA: 3'- aCGacUUGAAGCGCa-GUUG--GCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 10706 | 0.67 | 0.842575 |
Target: 5'- aGCUGGgcgGCUUUGCGUCGucgcuugcuuCCGcuGugGGg -3' miRNA: 3'- aCGACU---UGAAGCGCAGUu---------GGC--UugCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 647 | 0.67 | 0.842575 |
Target: 5'- uUGCUGAACgcgGCGUacaCGGCgCGggUGGc -3' miRNA: 3'- -ACGACUUGaagCGCA---GUUG-GCuuGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 34231 | 0.68 | 0.833354 |
Target: 5'- cGCUGAGCgcaaCGCGauacgUCAugcGCCGucgGCGGa -3' miRNA: 3'- aCGACUUGaa--GCGC-----AGU---UGGCu--UGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 23429 | 0.68 | 0.833354 |
Target: 5'- gGCUuuGACUUCGUGUCGcacGCCG-ACGa -3' miRNA: 3'- aCGAc-UUGAAGCGCAGU---UGGCuUGCc -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 25303 | 0.68 | 0.833354 |
Target: 5'- aGCUGAcgACgucgccCGUGUCAcaACCGGcACGGc -3' miRNA: 3'- aCGACU--UGaa----GCGCAGU--UGGCU-UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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