Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8093 | 3' | -55.1 | NC_001978.2 | + | 23582 | 0.66 | 0.671437 |
Target: 5'- cGGGUUCGg---CGCGUCGUacuccuucgcCGCugCCu -3' miRNA: 3'- -UCCAAGCguuaGUGCGGCA----------GCGugGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 27500 | 0.66 | 0.671437 |
Target: 5'- cAGGcgcgUCaGCGAacuUCACGCCGacaagCGCaauACCCg -3' miRNA: 3'- -UCCa---AG-CGUU---AGUGCGGCa----GCG---UGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 34166 | 0.66 | 0.671437 |
Target: 5'- -cGUggGCAAcugaGCGCCGUCgagugcGCGCCCa -3' miRNA: 3'- ucCAagCGUUag--UGCGGCAG------CGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 10614 | 0.66 | 0.660308 |
Target: 5'- cGG-UCGCAuccuGUCggcaGCGUCGUCGUugCUc -3' miRNA: 3'- uCCaAGCGU----UAG----UGCGGCAGCGugGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 8342 | 0.66 | 0.649151 |
Target: 5'- cGGUUCGCAGagAUGuuG-CGCuuCCg -3' miRNA: 3'- uCCAAGCGUUagUGCggCaGCGugGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 7658 | 0.66 | 0.649151 |
Target: 5'- cGGUUCGUAAcgCGCuGCCGaCGUACg- -3' miRNA: 3'- uCCAAGCGUUa-GUG-CGGCaGCGUGgg -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 39982 | 0.66 | 0.649151 |
Target: 5'- uGGUUCccCGAagACGCCGaCGCugACCCg -3' miRNA: 3'- uCCAAGc-GUUagUGCGGCaGCG--UGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 17914 | 0.66 | 0.637978 |
Target: 5'- --cUUCGCccggCACGCCGUCaGCGUCCu -3' miRNA: 3'- uccAAGCGuua-GUGCGGCAG-CGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 34103 | 0.66 | 0.637978 |
Target: 5'- uGGGaaCGCGuacaGUcCGCGCgaGUCGCcACCCa -3' miRNA: 3'- -UCCaaGCGU----UA-GUGCGg-CAGCG-UGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 21597 | 0.66 | 0.6268 |
Target: 5'- gGGGcUUCGU---CAUGCCGUCacaGCGCCg -3' miRNA: 3'- -UCC-AAGCGuuaGUGCGGCAG---CGUGGg -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 9878 | 0.66 | 0.6268 |
Target: 5'- --cUUCGC---CGCGCCGUCGaccuuGCCCa -3' miRNA: 3'- uccAAGCGuuaGUGCGGCAGCg----UGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 23846 | 0.66 | 0.6268 |
Target: 5'- ---gUCgGCAAUCGCGUCGUUGUACg- -3' miRNA: 3'- uccaAG-CGUUAGUGCGGCAGCGUGgg -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 5914 | 0.67 | 0.615627 |
Target: 5'- cGGGUUCGCuu---CGCCGguUCGC-UCCg -3' miRNA: 3'- -UCCAAGCGuuaguGCGGC--AGCGuGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 38965 | 0.67 | 0.615627 |
Target: 5'- aAGG--CGCcuUCcCGCCGaCGUACCCg -3' miRNA: 3'- -UCCaaGCGuuAGuGCGGCaGCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 26832 | 0.67 | 0.601125 |
Target: 5'- uGGUUCGCGccucGUCAUGgCGUCcgaaggcgagucggGCaaGCCCa -3' miRNA: 3'- uCCAAGCGU----UAGUGCgGCAG--------------CG--UGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 30929 | 0.67 | 0.593335 |
Target: 5'- aAGGagUGCuugagaauGUCGCGCUgaGUgGCGCCCa -3' miRNA: 3'- -UCCaaGCGu-------UAGUGCGG--CAgCGUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 26189 | 0.67 | 0.582235 |
Target: 5'- aAGG-UCGCccagGAUgCGCGCagCGUCGgCGCCCu -3' miRNA: 3'- -UCCaAGCG----UUA-GUGCG--GCAGC-GUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 4254 | 0.67 | 0.571177 |
Target: 5'- gAGcUUCGUuu---CGCCGUCGgCACCCu -3' miRNA: 3'- -UCcAAGCGuuaguGCGGCAGC-GUGGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 3391 | 0.67 | 0.56787 |
Target: 5'- uGGGUUgGU--UCACGCCG-CGCGacguccuucacauuCCCg -3' miRNA: 3'- -UCCAAgCGuuAGUGCGGCaGCGU--------------GGG- -5' |
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8093 | 3' | -55.1 | NC_001978.2 | + | 20776 | 0.68 | 0.560171 |
Target: 5'- cGGacCGCAaagaGUCccuUGCCGUCGCGUCCg -3' miRNA: 3'- uCCaaGCGU----UAGu--GCGGCAGCGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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