miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8093 3' -55.1 NC_001978.2 + 34166 0.66 0.671437
Target:  5'- -cGUggGCAAcugaGCGCCGUCgagugcGCGCCCa -3'
miRNA:   3'- ucCAagCGUUag--UGCGGCAG------CGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 23582 0.66 0.671437
Target:  5'- cGGGUUCGg---CGCGUCGUacuccuucgcCGCugCCu -3'
miRNA:   3'- -UCCAAGCguuaGUGCGGCA----------GCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 27500 0.66 0.671437
Target:  5'- cAGGcgcgUCaGCGAacuUCACGCCGacaagCGCaauACCCg -3'
miRNA:   3'- -UCCa---AG-CGUU---AGUGCGGCa----GCG---UGGG- -5'
8093 3' -55.1 NC_001978.2 + 10614 0.66 0.660308
Target:  5'- cGG-UCGCAuccuGUCggcaGCGUCGUCGUugCUc -3'
miRNA:   3'- uCCaAGCGU----UAG----UGCGGCAGCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 39982 0.66 0.649151
Target:  5'- uGGUUCccCGAagACGCCGaCGCugACCCg -3'
miRNA:   3'- uCCAAGc-GUUagUGCGGCaGCG--UGGG- -5'
8093 3' -55.1 NC_001978.2 + 7658 0.66 0.649151
Target:  5'- cGGUUCGUAAcgCGCuGCCGaCGUACg- -3'
miRNA:   3'- uCCAAGCGUUa-GUG-CGGCaGCGUGgg -5'
8093 3' -55.1 NC_001978.2 + 8342 0.66 0.649151
Target:  5'- cGGUUCGCAGagAUGuuG-CGCuuCCg -3'
miRNA:   3'- uCCAAGCGUUagUGCggCaGCGugGG- -5'
8093 3' -55.1 NC_001978.2 + 34103 0.66 0.637978
Target:  5'- uGGGaaCGCGuacaGUcCGCGCgaGUCGCcACCCa -3'
miRNA:   3'- -UCCaaGCGU----UA-GUGCGg-CAGCG-UGGG- -5'
8093 3' -55.1 NC_001978.2 + 17914 0.66 0.637978
Target:  5'- --cUUCGCccggCACGCCGUCaGCGUCCu -3'
miRNA:   3'- uccAAGCGuua-GUGCGGCAG-CGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 21597 0.66 0.6268
Target:  5'- gGGGcUUCGU---CAUGCCGUCacaGCGCCg -3'
miRNA:   3'- -UCC-AAGCGuuaGUGCGGCAG---CGUGGg -5'
8093 3' -55.1 NC_001978.2 + 9878 0.66 0.6268
Target:  5'- --cUUCGC---CGCGCCGUCGaccuuGCCCa -3'
miRNA:   3'- uccAAGCGuuaGUGCGGCAGCg----UGGG- -5'
8093 3' -55.1 NC_001978.2 + 23846 0.66 0.6268
Target:  5'- ---gUCgGCAAUCGCGUCGUUGUACg- -3'
miRNA:   3'- uccaAG-CGUUAGUGCGGCAGCGUGgg -5'
8093 3' -55.1 NC_001978.2 + 38965 0.67 0.615627
Target:  5'- aAGG--CGCcuUCcCGCCGaCGUACCCg -3'
miRNA:   3'- -UCCaaGCGuuAGuGCGGCaGCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 5914 0.67 0.615627
Target:  5'- cGGGUUCGCuu---CGCCGguUCGC-UCCg -3'
miRNA:   3'- -UCCAAGCGuuaguGCGGC--AGCGuGGG- -5'
8093 3' -55.1 NC_001978.2 + 26832 0.67 0.601125
Target:  5'- uGGUUCGCGccucGUCAUGgCGUCcgaaggcgagucggGCaaGCCCa -3'
miRNA:   3'- uCCAAGCGU----UAGUGCgGCAG--------------CG--UGGG- -5'
8093 3' -55.1 NC_001978.2 + 30929 0.67 0.593335
Target:  5'- aAGGagUGCuugagaauGUCGCGCUgaGUgGCGCCCa -3'
miRNA:   3'- -UCCaaGCGu-------UAGUGCGG--CAgCGUGGG- -5'
8093 3' -55.1 NC_001978.2 + 26189 0.67 0.582235
Target:  5'- aAGG-UCGCccagGAUgCGCGCagCGUCGgCGCCCu -3'
miRNA:   3'- -UCCaAGCG----UUA-GUGCG--GCAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 4254 0.67 0.571177
Target:  5'- gAGcUUCGUuu---CGCCGUCGgCACCCu -3'
miRNA:   3'- -UCcAAGCGuuaguGCGGCAGC-GUGGG- -5'
8093 3' -55.1 NC_001978.2 + 3391 0.67 0.56787
Target:  5'- uGGGUUgGU--UCACGCCG-CGCGacguccuucacauuCCCg -3'
miRNA:   3'- -UCCAAgCGuuAGUGCGGCaGCGU--------------GGG- -5'
8093 3' -55.1 NC_001978.2 + 20776 0.68 0.560171
Target:  5'- cGGacCGCAaagaGUCccuUGCCGUCGCGUCCg -3'
miRNA:   3'- uCCaaGCGU----UAGu--GCGGCAGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.