miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8099 5' -53.1 NC_001978.2 + 18888 0.66 0.781464
Target:  5'- aGCGUCGAUA-GCGggGaacGCCGCGc-GCa -3'
miRNA:   3'- -CGCGGCUGUaCGCaaC---UGGCGUauCG- -5'
8099 5' -53.1 NC_001978.2 + 30011 0.66 0.781464
Target:  5'- aGCGaCCGACucacGCGUUGucgcccuugcCCGUAaGGCg -3'
miRNA:   3'- -CGC-GGCUGua--CGCAACu---------GGCGUaUCG- -5'
8099 5' -53.1 NC_001978.2 + 20668 0.66 0.771117
Target:  5'- uUGCCGACGacgaCGUUGAgCgGCAgggGGCg -3'
miRNA:   3'- cGCGGCUGUac--GCAACU-GgCGUa--UCG- -5'
8099 5' -53.1 NC_001978.2 + 36455 0.66 0.771117
Target:  5'- gGCGaaguaCGGCGUGaCGaagcUGGgCGCGUGGCc -3'
miRNA:   3'- -CGCg----GCUGUAC-GCa---ACUgGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 10736 0.66 0.771117
Target:  5'- cCGCUGugGgGCGU--GCCGCGaagGGCg -3'
miRNA:   3'- cGCGGCugUaCGCAacUGGCGUa--UCG- -5'
8099 5' -53.1 NC_001978.2 + 33819 0.66 0.760617
Target:  5'- uUGUCGACGUGaCGUcgcucGACUGUcgGGCc -3'
miRNA:   3'- cGCGGCUGUAC-GCAa----CUGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 23917 0.66 0.749978
Target:  5'- gGCGUCGuCAgaaGCG--GugCGCAUGGUg -3'
miRNA:   3'- -CGCGGCuGUa--CGCaaCugGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 4921 0.66 0.749978
Target:  5'- gGCGCgCGAgCGUGCG---ACCGCugAGCu -3'
miRNA:   3'- -CGCG-GCU-GUACGCaacUGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 34301 0.66 0.73921
Target:  5'- gGCGCaUGACGUaucGCGUUGcGCUcaGCGUGGUc -3'
miRNA:   3'- -CGCG-GCUGUA---CGCAAC-UGG--CGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 28106 0.66 0.73921
Target:  5'- gGCGCCGACGggucGaCGUaGAaCGCAcugAGCg -3'
miRNA:   3'- -CGCGGCUGUa---C-GCAaCUgGCGUa--UCG- -5'
8099 5' -53.1 NC_001978.2 + 18367 0.66 0.73921
Target:  5'- cGCGgCG-CGUGCGUaGuuGCCGCccGGCu -3'
miRNA:   3'- -CGCgGCuGUACGCAaC--UGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 29094 0.66 0.73921
Target:  5'- gGCGUCGuc--GCGUUGGCaGCGUgaAGCg -3'
miRNA:   3'- -CGCGGCuguaCGCAACUGgCGUA--UCG- -5'
8099 5' -53.1 NC_001978.2 + 5869 0.67 0.718445
Target:  5'- gGCGCCGACGguaagaGCGgacugccacagguacUGACCGUuc-GCg -3'
miRNA:   3'- -CGCGGCUGUa-----CGCa--------------ACUGGCGuauCG- -5'
8099 5' -53.1 NC_001978.2 + 37221 0.67 0.717342
Target:  5'- cGCGCC-AUGUGCGaaGACCuagGCAUcgGGCg -3'
miRNA:   3'- -CGCGGcUGUACGCaaCUGG---CGUA--UCG- -5'
8099 5' -53.1 NC_001978.2 + 24086 0.67 0.714028
Target:  5'- uCGCCGACGUacagggcuucacccGCGUagucagUGACCGUuccGCg -3'
miRNA:   3'- cGCGGCUGUA--------------CGCA------ACUGGCGuauCG- -5'
8099 5' -53.1 NC_001978.2 + 30085 0.67 0.710707
Target:  5'- uUGCCGACuggGCgGacgaauucacccaggUUGGCCGUGUGGCc -3'
miRNA:   3'- cGCGGCUGua-CG-C---------------AACUGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 33079 0.67 0.706267
Target:  5'- cGCGCCggucGACAUG-GUUGuaACCgggaaccuucggGCGUGGCg -3'
miRNA:   3'- -CGCGG----CUGUACgCAAC--UGG------------CGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 24597 0.67 0.695115
Target:  5'- uGUGUCGGCGUGC-UUGcccuugccauuACCGCAaUGGUg -3'
miRNA:   3'- -CGCGGCUGUACGcAAC-----------UGGCGU-AUCG- -5'
8099 5' -53.1 NC_001978.2 + 15511 0.67 0.695115
Target:  5'- aCGCCGACGUaCGUUG-CCGUcccgGGUc -3'
miRNA:   3'- cGCGGCUGUAcGCAACuGGCGua--UCG- -5'
8099 5' -53.1 NC_001978.2 + 12388 0.67 0.688392
Target:  5'- uGUGCCGAag-GCGUcgaccacguucacgcUGACCGUGU-GCc -3'
miRNA:   3'- -CGCGGCUguaCGCA---------------ACUGGCGUAuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.