miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8100 3' -56.2 NC_001978.2 + 14237 0.66 0.629437
Target:  5'- uGCCGGAcaccaugccGCGCCcGAuaGCCGACCa -3'
miRNA:   3'- -CGGCUUcu-------UGUGGaCUcgCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 10854 0.66 0.618364
Target:  5'- uCCGAAGAuucGCGCCaUGGGUG--GACCGg -3'
miRNA:   3'- cGGCUUCU---UGUGG-ACUCGCggCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 33642 0.66 0.618364
Target:  5'- cCCGggGucACACCcGAcggucacgGCGCCGACa- -3'
miRNA:   3'- cGGCuuCu-UGUGGaCU--------CGCGGCUGgc -5'
8100 3' -56.2 NC_001978.2 + 12169 0.66 0.607303
Target:  5'- gGCUGggGGcgGCACgUGGGCaugGUCGAgCGg -3'
miRNA:   3'- -CGGCuuCU--UGUGgACUCG---CGGCUgGC- -5'
8100 3' -56.2 NC_001978.2 + 23638 0.66 0.607303
Target:  5'- aGCCGAAGAcgACgUUGAGCGCguCGGCa- -3'
miRNA:   3'- -CGGCUUCUugUG-GACUCGCG--GCUGgc -5'
8100 3' -56.2 NC_001978.2 + 33154 0.66 0.607303
Target:  5'- cGCCGAcgcugagauucgGGAGuuCGCCggucGGGUGCuCGACCa -3'
miRNA:   3'- -CGGCU------------UCUU--GUGGa---CUCGCG-GCUGGc -5'
8100 3' -56.2 NC_001978.2 + 23715 0.66 0.600676
Target:  5'- cGCCGAagcguggcccgaugcGGAACaaGCUugUGAGCuacuacaaGCCGACCa -3'
miRNA:   3'- -CGGCU---------------UCUUG--UGG--ACUCG--------CGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 31093 0.66 0.596263
Target:  5'- aCUGAcGAACGCC-GGGCGCaaguaacaGACCa -3'
miRNA:   3'- cGGCUuCUUGUGGaCUCGCGg-------CUGGc -5'
8100 3' -56.2 NC_001978.2 + 13138 0.66 0.596263
Target:  5'- uGCCGAccccGACacgcuucaGCCUGGGCGuuCCGGCCu -3'
miRNA:   3'- -CGGCUuc--UUG--------UGGACUCGC--GGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 4114 0.66 0.596263
Target:  5'- cGgCGAAGAGCcggaGCCUGAGCcuGCCc-CCGc -3'
miRNA:   3'- -CgGCUUCUUG----UGGACUCG--CGGcuGGC- -5'
8100 3' -56.2 NC_001978.2 + 24897 0.66 0.585254
Target:  5'- cCCGcuGAGCAagggGGGCGCCGACg- -3'
miRNA:   3'- cGGCuuCUUGUgga-CUCGCGGCUGgc -5'
8100 3' -56.2 NC_001978.2 + 28426 0.66 0.585254
Target:  5'- uGCCGAAGcgUugCUugccaugggcGAGaCGCUGACCc -3'
miRNA:   3'- -CGGCUUCuuGugGA----------CUC-GCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 39988 0.66 0.585254
Target:  5'- cCCGAAG-ACGCC-GA-CGCUGACCc -3'
miRNA:   3'- cGGCUUCuUGUGGaCUcGCGGCUGGc -5'
8100 3' -56.2 NC_001978.2 + 26372 0.66 0.574285
Target:  5'- aCCGgcGAGCACa--AGCGCCGcGCCc -3'
miRNA:   3'- cGGCuuCUUGUGgacUCGCGGC-UGGc -5'
8100 3' -56.2 NC_001978.2 + 3105 0.66 0.571004
Target:  5'- aGCCGGAccGAcgcgaacacugccgACACCUGaAGCGCgucaugcggagUGACCGu -3'
miRNA:   3'- -CGGCUU--CU--------------UGUGGAC-UCGCG-----------GCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 19999 0.67 0.563364
Target:  5'- aGCCGGAacuuGAgcuguGCGCCgGGugcucgaaggucGUGCCGACCGg -3'
miRNA:   3'- -CGGCUU----CU-----UGUGGaCU------------CGCGGCUGGC- -5'
8100 3' -56.2 NC_001978.2 + 22055 0.67 0.563364
Target:  5'- cGCCGAccuGGGCAgCgaAGCGCaCGACCu -3'
miRNA:   3'- -CGGCUu--CUUGUgGacUCGCG-GCUGGc -5'
8100 3' -56.2 NC_001978.2 + 30343 0.67 0.562275
Target:  5'- cGCCGAAGGGCAagcGAcucagcaaggaacGCGCCGaaGCCGc -3'
miRNA:   3'- -CGGCUUCUUGUggaCU-------------CGCGGC--UGGC- -5'
8100 3' -56.2 NC_001978.2 + 35215 0.67 0.5525
Target:  5'- cGCCgGAAGGACAC--GGGCGCCaugguuGCCGc -3'
miRNA:   3'- -CGG-CUUCUUGUGgaCUCGCGGc-----UGGC- -5'
8100 3' -56.2 NC_001978.2 + 35659 0.67 0.549253
Target:  5'- cCCGggGucuucggucgcgccGACGCUcagGGGCGCCGucuCCGg -3'
miRNA:   3'- cGGCuuC--------------UUGUGGa--CUCGCGGCu--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.