miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8102 5' -57.9 NC_001978.2 + 20574 0.66 0.514339
Target:  5'- gUGAACCcgGCgaccGGUcuGCCCGaccuGACGGCg -3'
miRNA:   3'- -ACUUGGuaCG----CCG--UGGGCcc--UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 12399 0.66 0.514339
Target:  5'- -cGGCCGUGuCGGgACCguCGGcGAAgCGGCa -3'
miRNA:   3'- acUUGGUAC-GCCgUGG--GCC-CUU-GCCG- -5'
8102 5' -57.9 NC_001978.2 + 35963 0.66 0.514339
Target:  5'- -cGGCUucGUGGUugugcCCCGGGAAgGGCa -3'
miRNA:   3'- acUUGGuaCGCCGu----GGGCCCUUgCCG- -5'
8102 5' -57.9 NC_001978.2 + 19527 0.66 0.511193
Target:  5'- gGAGCUGacCGGCgccgaccacaucacGCCCGGGugGACGGUg -3'
miRNA:   3'- aCUUGGUacGCCG--------------UGGGCCC--UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 8615 0.66 0.493517
Target:  5'- cGAcauacGCCAUGgCGcgaaGCAUCgGGGcACGGCg -3'
miRNA:   3'- aCU-----UGGUAC-GC----CGUGGgCCCuUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 27316 0.66 0.493517
Target:  5'- gGAGUCGU-CGGCagcgucgagcacGCCCGGGAAgaaacCGGCg -3'
miRNA:   3'- aCUUGGUAcGCCG------------UGGGCCCUU-----GCCG- -5'
8102 5' -57.9 NC_001978.2 + 9355 0.66 0.487346
Target:  5'- cGAAgCGUuugacauucucguucGUGGCGCCCaGGAA-GGCg -3'
miRNA:   3'- aCUUgGUA---------------CGCCGUGGGcCCUUgCCG- -5'
8102 5' -57.9 NC_001978.2 + 30646 0.66 0.47309
Target:  5'- cGGACguUGCGGCGCuuGaaGACGuGCu -3'
miRNA:   3'- aCUUGguACGCCGUGggCccUUGC-CG- -5'
8102 5' -57.9 NC_001978.2 + 1749 0.66 0.47309
Target:  5'- cGggUCGUGuCGGCggACgCCGG--ACGGCa -3'
miRNA:   3'- aCuuGGUAC-GCCG--UG-GGCCcuUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 30371 0.66 0.47309
Target:  5'- cGAGCCggGCGGCuucguacacgucGCCCuc-GGCGGCu -3'
miRNA:   3'- aCUUGGuaCGCCG------------UGGGcccUUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 16927 0.66 0.47309
Target:  5'- cGuACCAUGCGcGCGCCCaGG-GCGa- -3'
miRNA:   3'- aCuUGGUACGC-CGUGGGcCCuUGCcg -5'
8102 5' -57.9 NC_001978.2 + 35830 0.67 0.453096
Target:  5'- cGAACCGgcgggaGUGGUcgAgCUGGGcGACGGCg -3'
miRNA:   3'- aCUUGGUa-----CGCCG--UgGGCCC-UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 6757 0.67 0.453096
Target:  5'- cUGAgcgcGCCGUGUauGGCAUUCGGGAuuacgugaaGGCc -3'
miRNA:   3'- -ACU----UGGUACG--CCGUGGGCCCUug-------CCG- -5'
8102 5' -57.9 NC_001978.2 + 35571 0.67 0.453096
Target:  5'- cGAGCCGgagaCGGCGCCCcuGAGCgucGGCg -3'
miRNA:   3'- aCUUGGUac--GCCGUGGGccCUUG---CCG- -5'
8102 5' -57.9 NC_001978.2 + 36276 0.67 0.443274
Target:  5'- cGAACCcgGCGGgugcugACCgGGGGGCGu- -3'
miRNA:   3'- aCUUGGuaCGCCg-----UGGgCCCUUGCcg -5'
8102 5' -57.9 NC_001978.2 + 39185 0.67 0.433572
Target:  5'- ---cCCGUGauGCuGCCCGGGugAAUGGCg -3'
miRNA:   3'- acuuGGUACgcCG-UGGGCCC--UUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 23535 0.67 0.433572
Target:  5'- aGAGCUu--CGGCACCCGc--ACGGCu -3'
miRNA:   3'- aCUUGGuacGCCGUGGGCccuUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 36697 0.67 0.433572
Target:  5'- cUGAGCCGguaccgGCGGagccugaGCCCGucacggagccGGAgACGGCg -3'
miRNA:   3'- -ACUUGGUa-----CGCCg------UGGGC----------CCU-UGCCG- -5'
8102 5' -57.9 NC_001978.2 + 19939 0.68 0.405227
Target:  5'- gUGAAUCGcGuCGGCcCCCGGc-ACGGCg -3'
miRNA:   3'- -ACUUGGUaC-GCCGuGGGCCcuUGCCG- -5'
8102 5' -57.9 NC_001978.2 + 280 0.68 0.396041
Target:  5'- cGGAaCGUGUGGCAagCCGGuAugGGCg -3'
miRNA:   3'- aCUUgGUACGCCGUg-GGCCcUugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.