miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8103 5' -51.5 NC_001978.2 + 23876 0.66 0.868184
Target:  5'- cCGGCGaCGCcGGg--UCG-AGCGCUGCc -3'
miRNA:   3'- -GCUGC-GCGaCUauaGGCaUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 8861 0.66 0.868184
Target:  5'- cCGGCGCGCUucGUGUCUcu-GCGCUcaGCc -3'
miRNA:   3'- -GCUGCGCGAc-UAUAGGcauUGCGA--CG- -5'
8103 5' -51.5 NC_001978.2 + 18555 0.66 0.868184
Target:  5'- gGGCGCGCUcagucgggcaagGAU-UCCGUcggGGCGCgucuccgGCa -3'
miRNA:   3'- gCUGCGCGA------------CUAuAGGCA---UUGCGa------CG- -5'
8103 5' -51.5 NC_001978.2 + 13964 0.66 0.868184
Target:  5'- uCGACGuCGUUGAUGagaaCGgcACGgaGCu -3'
miRNA:   3'- -GCUGC-GCGACUAUag--GCauUGCgaCG- -5'
8103 5' -51.5 NC_001978.2 + 18148 0.66 0.859736
Target:  5'- gGACGCGCUGAagGUCCcgAAgGuCUGa -3'
miRNA:   3'- gCUGCGCGACUa-UAGGcaUUgC-GACg -5'
8103 5' -51.5 NC_001978.2 + 11025 0.66 0.859736
Target:  5'- gGGCGCGaa-GUcgCCugGGCGCUGCg -3'
miRNA:   3'- gCUGCGCgacUAuaGGcaUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 15423 0.66 0.858015
Target:  5'- uGGCGCGCgcaccuauUCCaUggUGCUGCc -3'
miRNA:   3'- gCUGCGCGacuau---AGGcAuuGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 18952 0.66 0.842076
Target:  5'- cCGGCaCGCUGAg--CCG-GACGC-GCa -3'
miRNA:   3'- -GCUGcGCGACUauaGGCaUUGCGaCG- -5'
8103 5' -51.5 NC_001978.2 + 3136 0.66 0.822506
Target:  5'- uGACGCcggaaugGCUcGAcUAUCCG-AACGCUGa -3'
miRNA:   3'- gCUGCG-------CGA-CU-AUAGGCaUUGCGACg -5'
8103 5' -51.5 NC_001978.2 + 39201 0.66 0.819631
Target:  5'- -cAUGCGCUuacaaagccCCGUGAUGCUGCc -3'
miRNA:   3'- gcUGCGCGAcuaua----GGCAUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 32396 0.67 0.813821
Target:  5'- -aGCGCGCU----UCUGUGACGCcgucuUGCg -3'
miRNA:   3'- gcUGCGCGAcuauAGGCAUUGCG-----ACG- -5'
8103 5' -51.5 NC_001978.2 + 23644 0.67 0.813821
Target:  5'- aGACGaCGUUGAgcgcGUCggcaaggGUGGCGCUGUg -3'
miRNA:   3'- gCUGC-GCGACUa---UAGg------CAUUGCGACG- -5'
8103 5' -51.5 NC_001978.2 + 5678 0.67 0.807938
Target:  5'- cCGACGCGCUGAUugAUcucuuccaugaggucCCGUcGGCGUaccGCa -3'
miRNA:   3'- -GCUGCGCGACUA--UA---------------GGCA-UUGCGa--CG- -5'
8103 5' -51.5 NC_001978.2 + 18824 0.67 0.803975
Target:  5'- cCGACGUGCUGAaggAUUCG--GCGCa-- -3'
miRNA:   3'- -GCUGCGCGACUa--UAGGCauUGCGacg -5'
8103 5' -51.5 NC_001978.2 + 28723 0.67 0.803975
Target:  5'- -aGCGUGUUGAUGUUCGggugaauACGCccgUGCg -3'
miRNA:   3'- gcUGCGCGACUAUAGGCau-----UGCG---ACG- -5'
8103 5' -51.5 NC_001978.2 + 26362 0.67 0.793934
Target:  5'- aCGACGCGCauUGAUGcacUCa-UGACGgaGCu -3'
miRNA:   3'- -GCUGCGCG--ACUAU---AGgcAUUGCgaCG- -5'
8103 5' -51.5 NC_001978.2 + 38143 0.67 0.792919
Target:  5'- gGGCGagcCGCUGAcGUCCcgaaggcGUGGCGCgGCu -3'
miRNA:   3'- gCUGC---GCGACUaUAGG-------CAUUGCGaCG- -5'
8103 5' -51.5 NC_001978.2 + 31722 0.67 0.78371
Target:  5'- gCGACGCGCUGAacaaaugGUUCGacggauggacUGACGCa-- -3'
miRNA:   3'- -GCUGCGCGACUa------UAGGC----------AUUGCGacg -5'
8103 5' -51.5 NC_001978.2 + 7730 0.67 0.773315
Target:  5'- aCGACGCGUUuGUGUCCG--GCGaagugUGCu -3'
miRNA:   3'- -GCUGCGCGAcUAUAGGCauUGCg----ACG- -5'
8103 5' -51.5 NC_001978.2 + 2715 0.67 0.773315
Target:  5'- aCGACGCGUguuccUUCGUGAUGC-GCg -3'
miRNA:   3'- -GCUGCGCGacuauAGGCAUUGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.