miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8107 5' -62.9 NC_001978.2 + 21884 0.66 0.291311
Target:  5'- cGUCGGUuaUCGGCAUGcUGCCGAaGCa -3'
miRNA:   3'- -CAGCCGggGGCCGUGCcGCGGUUaCG- -5'
8107 5' -62.9 NC_001978.2 + 25616 0.66 0.291311
Target:  5'- cGUUGGCUgagccugaagaaCCCGgacgggcagcGCugGGCGCCGuaugGCg -3'
miRNA:   3'- -CAGCCGG------------GGGC----------CGugCCGCGGUua--CG- -5'
8107 5' -62.9 NC_001978.2 + 36377 0.66 0.290602
Target:  5'- aUgGGCauggUCCGGCugGGUGCUgggcuugaucguuGAUGCg -3'
miRNA:   3'- cAgCCGg---GGGCCGugCCGCGG-------------UUACG- -5'
8107 5' -62.9 NC_001978.2 + 28290 0.66 0.28428
Target:  5'- cGUCGGCCggaugCUCaGGCGCgcguguucGGCGUCAagGCa -3'
miRNA:   3'- -CAGCCGG-----GGG-CCGUG--------CCGCGGUuaCG- -5'
8107 5' -62.9 NC_001978.2 + 9011 0.66 0.28428
Target:  5'- aUC-GCCgUCGGCAuUGGCGCCGGUaucGCu -3'
miRNA:   3'- cAGcCGGgGGCCGU-GCCGCGGUUA---CG- -5'
8107 5' -62.9 NC_001978.2 + 26301 0.66 0.28428
Target:  5'- ---cGCCaUgGGCGCGGCGCUuGUGCu -3'
miRNA:   3'- cagcCGGgGgCCGUGCCGCGGuUACG- -5'
8107 5' -62.9 NC_001978.2 + 37493 0.66 0.274664
Target:  5'- cGUCGGCguaggcggagcgcaCUCCGGCggucagugccucaGCGGCGCUaucGAUGg -3'
miRNA:   3'- -CAGCCG--------------GGGGCCG-------------UGCCGCGG---UUACg -5'
8107 5' -62.9 NC_001978.2 + 30299 0.66 0.270622
Target:  5'- cGUCGG-CCCCGGCGu--UGCCGuUGCg -3'
miRNA:   3'- -CAGCCgGGGGCCGUgccGCGGUuACG- -5'
8107 5' -62.9 NC_001978.2 + 36850 0.66 0.270622
Target:  5'- cGUCGGCaggCUCCGGCucaggcucCGGCGUCg--GCu -3'
miRNA:   3'- -CAGCCG---GGGGCCGu-------GCCGCGGuuaCG- -5'
8107 5' -62.9 NC_001978.2 + 23954 0.66 0.269954
Target:  5'- --gGGCUUCCGGCGgguacugccacagUGGCGCCuucacgGCg -3'
miRNA:   3'- cagCCGGGGGCCGU-------------GCCGCGGuua---CG- -5'
8107 5' -62.9 NC_001978.2 + 25726 0.66 0.257498
Target:  5'- -cCGGCgucaCCCCGGaacacgccaUACGGCGCCca-GCg -3'
miRNA:   3'- caGCCG----GGGGCC---------GUGCCGCGGuuaCG- -5'
8107 5' -62.9 NC_001978.2 + 20425 0.66 0.257498
Target:  5'- uUCGGCUUCCGGgGugacCGGCGUCA--GCu -3'
miRNA:   3'- cAGCCGGGGGCCgU----GCCGCGGUuaCG- -5'
8107 5' -62.9 NC_001978.2 + 22696 0.66 0.257498
Target:  5'- aGUCGGCaacccgcuaCCgGGCGCGuCGCUgAGUGCc -3'
miRNA:   3'- -CAGCCGg--------GGgCCGUGCcGCGG-UUACG- -5'
8107 5' -62.9 NC_001978.2 + 27352 0.66 0.257498
Target:  5'- uUUGGUCCCggaaGGCguuuuACGGCGCCAuggaagaGCg -3'
miRNA:   3'- cAGCCGGGGg---CCG-----UGCCGCGGUua-----CG- -5'
8107 5' -62.9 NC_001978.2 + 14164 0.66 0.257498
Target:  5'- gGUCGGCUaucgggCgCGGCAUGGUGUCcg-GCa -3'
miRNA:   3'- -CAGCCGG------GgGCCGUGCCGCGGuuaCG- -5'
8107 5' -62.9 NC_001978.2 + 34692 0.67 0.241219
Target:  5'- cGUCGGCUcgaaCCCGGCAagcugggcguucaguCGGuCGCgGAgcuUGCg -3'
miRNA:   3'- -CAGCCGG----GGGCCGU---------------GCC-GCGgUU---ACG- -5'
8107 5' -62.9 NC_001978.2 + 25480 0.67 0.221236
Target:  5'- cGUCGaGCCCgaaCCGGUcgGCGGCGUagucgGCg -3'
miRNA:   3'- -CAGC-CGGG---GGCCG--UGCCGCGguua-CG- -5'
8107 5' -62.9 NC_001978.2 + 13725 0.67 0.221236
Target:  5'- uGUCGGCgCCgaccgcauaGGCGCGaGuCGCCAuUGCc -3'
miRNA:   3'- -CAGCCGgGGg--------CCGUGC-C-GCGGUuACG- -5'
8107 5' -62.9 NC_001978.2 + 33282 0.68 0.199551
Target:  5'- aGUCGGCauguCCUGaacggaGUugGGCGCUAcgGCg -3'
miRNA:   3'- -CAGCCGg---GGGC------CGugCCGCGGUuaCG- -5'
8107 5' -62.9 NC_001978.2 + 12136 0.68 0.194427
Target:  5'- gGUCGG-CUCCGGCACGGUccuuaucgggGgCAcgGCu -3'
miRNA:   3'- -CAGCCgGGGGCCGUGCCG----------CgGUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.