miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 23630 0.66 0.613879
Target:  5'- gCGGCCAagcuCCGgGUCgUCGGCGaGCg -3'
miRNA:   3'- gGCUGGUgc--GGUgUAGaAGCCGCgCG- -5'
8111 5' -56.8 NC_001978.2 + 12867 0.66 0.612784
Target:  5'- uCUGACCcgACGCCcCAuagguguUCUgagUCgGGCGCGUa -3'
miRNA:   3'- -GGCUGG--UGCGGuGU-------AGA---AG-CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 30492 0.66 0.60294
Target:  5'- cCCGACgGCGagauuCGCccgaagGUCggUCGGgGCGCa -3'
miRNA:   3'- -GGCUGgUGCg----GUG------UAGa-AGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 41116 0.66 0.60294
Target:  5'- -aGcACCACGCCACcuAUCa--GGCacaGCGCa -3'
miRNA:   3'- ggC-UGGUGCGGUG--UAGaagCCG---CGCG- -5'
8111 5' -56.8 NC_001978.2 + 26910 0.66 0.60294
Target:  5'- cCCGACUcgccuucggACGCCAUGaCga-GGCGCGa -3'
miRNA:   3'- -GGCUGG---------UGCGGUGUaGaagCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 33132 0.66 0.60294
Target:  5'- gUCGACCgGCGCgGCGUUg--GGCaguaGCGCa -3'
miRNA:   3'- -GGCUGG-UGCGgUGUAGaagCCG----CGCG- -5'
8111 5' -56.8 NC_001978.2 + 30648 0.66 0.592026
Target:  5'- aUCGAgCACGCacgUACGggCUUCGGCGUc- -3'
miRNA:   3'- -GGCUgGUGCG---GUGUa-GAAGCCGCGcg -5'
8111 5' -56.8 NC_001978.2 + 32163 0.66 0.592026
Target:  5'- gCCGACCGgGgCGgacgggUAUCgaCGGaCGCGCg -3'
miRNA:   3'- -GGCUGGUgCgGU------GUAGaaGCC-GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 27264 0.66 0.592026
Target:  5'- gCCGACgACuCCGCgAUUgugUCGG-GCGCu -3'
miRNA:   3'- -GGCUGgUGcGGUG-UAGa--AGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 16287 0.66 0.592026
Target:  5'- uUGACCgACGUCACGgcguUCgggUCGGCaaGCu -3'
miRNA:   3'- gGCUGG-UGCGGUGU----AGa--AGCCGcgCG- -5'
8111 5' -56.8 NC_001978.2 + 35579 0.66 0.581146
Target:  5'- -aGACgGCGCCcCugagCgUCGGCGCGa -3'
miRNA:   3'- ggCUGgUGCGGuGua--GaAGCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 39417 0.66 0.581146
Target:  5'- cUCGACCG-GCCggaGCGUgaUCGGguCGCGCu -3'
miRNA:   3'- -GGCUGGUgCGG---UGUAgaAGCC--GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 38185 0.66 0.581146
Target:  5'- cCCGugCGCucccacaucuGCCACGUCUgaaGGCaGUGg -3'
miRNA:   3'- -GGCugGUG----------CGGUGUAGAag-CCG-CGCg -5'
8111 5' -56.8 NC_001978.2 + 37295 0.66 0.570308
Target:  5'- uCCGcCCgAUGCCuAgGUCUUCgcacauGGCGCGUu -3'
miRNA:   3'- -GGCuGG-UGCGG-UgUAGAAG------CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 2792 0.66 0.563829
Target:  5'- gCCGuugucuUCACGCCACAUCacagcgccgugaaCGGCGaGCa -3'
miRNA:   3'- -GGCu-----GGUGCGGUGUAGaa-----------GCCGCgCG- -5'
8111 5' -56.8 NC_001978.2 + 37570 0.66 0.55952
Target:  5'- aCCGGCCAUcgGUCACAagCUUCa-UGCGCa -3'
miRNA:   3'- -GGCUGGUG--CGGUGUa-GAAGccGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 5105 0.66 0.557369
Target:  5'- gUCGAuaCCGCGCUugAUCcggccgucaaagUCGGCGacCGCa -3'
miRNA:   3'- -GGCU--GGUGCGGugUAGa-----------AGCCGC--GCG- -5'
8111 5' -56.8 NC_001978.2 + 37536 0.67 0.54772
Target:  5'- gCCGACCACGUugaagagaaugugCGCgagcgucgucuGUCUucgUCGGCGUagGCg -3'
miRNA:   3'- -GGCUGGUGCG-------------GUG-----------UAGA---AGCCGCG--CG- -5'
8111 5' -56.8 NC_001978.2 + 28019 0.67 0.545583
Target:  5'- aCCGGCCucaaGCCGCucagugcguucuacGUCgacccgUCGGCGC-Cg -3'
miRNA:   3'- -GGCUGGug--CGGUG--------------UAGa-----AGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 25406 0.67 0.538124
Target:  5'- gCCGACUACGCCGCcgac-CGGUucGgGCu -3'
miRNA:   3'- -GGCUGGUGCGGUGuagaaGCCG--CgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.