miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8117 3' -56 NC_001978.2 + 9584 0.66 0.630994
Target:  5'- gUGAacGCGGCGuACAAGUCCauggggcugaaCGGCGcCGAg -3'
miRNA:   3'- gACU--UGCUGC-UGUUCGGG-----------GCCGU-GCU- -5'
8117 3' -56 NC_001978.2 + 30671 0.66 0.61988
Target:  5'- gCUGAcgguccccaGCGAccCGACuGAGCgCCGGUACGu -3'
miRNA:   3'- -GACU---------UGCU--GCUG-UUCGgGGCCGUGCu -5'
8117 3' -56 NC_001978.2 + 29190 0.66 0.61988
Target:  5'- -cGGACacagUGACAAGCCCCGugccGCGCGc -3'
miRNA:   3'- gaCUUGcu--GCUGUUCGGGGC----CGUGCu -5'
8117 3' -56 NC_001978.2 + 4454 0.66 0.61988
Target:  5'- uCUGucgcAGCGACGGCGccccuGCCCCaGGaACGAu -3'
miRNA:   3'- -GAC----UUGCUGCUGUu----CGGGG-CCgUGCU- -5'
8117 3' -56 NC_001978.2 + 7800 0.66 0.616548
Target:  5'- gCUGAGCGuuGA--GGCUCCGGCgauucaguucacggGCGAg -3'
miRNA:   3'- -GACUUGCugCUguUCGGGGCCG--------------UGCU- -5'
8117 3' -56 NC_001978.2 + 9063 0.66 0.608778
Target:  5'- -gGAACGACGuccuugccGCCCaguugGGCGCGAc -3'
miRNA:   3'- gaCUUGCUGCuguu----CGGGg----CCGUGCU- -5'
8117 3' -56 NC_001978.2 + 4630 0.66 0.608778
Target:  5'- -cGGACGACGACGA-CCCUGaG-ACGGg -3'
miRNA:   3'- gaCUUGCUGCUGUUcGGGGC-CgUGCU- -5'
8117 3' -56 NC_001978.2 + 6069 0.66 0.608778
Target:  5'- -cGGGCGuCGACAAGaagaCCguCGGCGCGc -3'
miRNA:   3'- gaCUUGCuGCUGUUCg---GG--GCCGUGCu -5'
8117 3' -56 NC_001978.2 + 19634 0.66 0.597696
Target:  5'- -aGGACGGCGACAAGgucagcgaCCCGcGCAagGAc -3'
miRNA:   3'- gaCUUGCUGCUGUUCg-------GGGC-CGUg-CU- -5'
8117 3' -56 NC_001978.2 + 20316 0.66 0.597696
Target:  5'- -cGcuCGACGGuCAaggaAGCCCgcaCGGCGCGAg -3'
miRNA:   3'- gaCuuGCUGCU-GU----UCGGG---GCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 13675 0.66 0.597696
Target:  5'- --cGGCGcCGACAacGGCaaCGGCACGAa -3'
miRNA:   3'- gacUUGCuGCUGU--UCGggGCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 21660 0.66 0.597696
Target:  5'- gCUGuGACGGCauGACgAAGCCCCgucGGUACGu -3'
miRNA:   3'- -GAC-UUGCUG--CUG-UUCGGGG---CCGUGCu -5'
8117 3' -56 NC_001978.2 + 4190 0.66 0.597696
Target:  5'- -gGAGCGGgGGCAGGCUCaGGCucCGGc -3'
miRNA:   3'- gaCUUGCUgCUGUUCGGGgCCGu-GCU- -5'
8117 3' -56 NC_001978.2 + 39168 0.66 0.597696
Target:  5'- gUGAAUGGCGGCuuGacugCCCGGCuuGAa -3'
miRNA:   3'- gACUUGCUGCUGuuCg---GGGCCGugCU- -5'
8117 3' -56 NC_001978.2 + 9263 0.66 0.597696
Target:  5'- aUGGACGucGCGACGGuCCUgGGCgACGAa -3'
miRNA:   3'- gACUUGC--UGCUGUUcGGGgCCG-UGCU- -5'
8117 3' -56 NC_001978.2 + 26470 0.66 0.597696
Target:  5'- gUGGuCGACcuucguacgGGCAAGCUCCGcgcGCACGAc -3'
miRNA:   3'- gACUuGCUG---------CUGUUCGGGGC---CGUGCU- -5'
8117 3' -56 NC_001978.2 + 24405 0.66 0.585541
Target:  5'- cCUGGGCGACGuGCGAGCgcugaagCCgGGCgacACGGu -3'
miRNA:   3'- -GACUUGCUGC-UGUUCG-------GGgCCG---UGCU- -5'
8117 3' -56 NC_001978.2 + 29092 0.66 0.583336
Target:  5'- -cGGGCGucgucgcguuggcaGCGugAAGCgCgCGGCACGGg -3'
miRNA:   3'- gaCUUGC--------------UGCugUUCGgG-GCCGUGCU- -5'
8117 3' -56 NC_001978.2 + 30327 0.67 0.564665
Target:  5'- aUGGACGcguagaccuucACGGCGuuuucgucGGCCCCGGCGu-- -3'
miRNA:   3'- gACUUGC-----------UGCUGU--------UCGGGGCCGUgcu -5'
8117 3' -56 NC_001978.2 + 20470 0.67 0.564665
Target:  5'- -aGGACGGCGuCAAGCUCUucucucagGGCGuCGAc -3'
miRNA:   3'- gaCUUGCUGCuGUUCGGGG--------CCGU-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.