miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8151 3' -55.3 NC_001978.2 + 21660 0.66 0.673317
Target:  5'- gCUguGaCGGCaugacGAAGCCCcGuCGGUACGUg -3'
miRNA:   3'- gGAguC-GCCG-----CUUCGGG-C-GUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 26041 0.66 0.673317
Target:  5'- gCC-CAGguugaGGCGGAGCaCCGUAAggccgaagucGCGCa -3'
miRNA:   3'- -GGaGUCg----CCGCUUCG-GGCGUUa---------UGCG- -5'
8151 3' -55.3 NC_001978.2 + 7899 0.66 0.672207
Target:  5'- cCCgggCGaCGGCGugacGCCCGCAAUcaagcucACGUa -3'
miRNA:   3'- -GGa--GUcGCCGCuu--CGGGCGUUA-------UGCG- -5'
8151 3' -55.3 NC_001978.2 + 35635 0.66 0.651056
Target:  5'- gCUCAGgGGCGccgucuccGGCUCGaCAuccgGCGCu -3'
miRNA:   3'- gGAGUCgCCGCu-------UCGGGC-GUua--UGCG- -5'
8151 3' -55.3 NC_001978.2 + 19155 0.66 0.648825
Target:  5'- -gUCAGuCGGCGggGgCCGaaggugcuaGCGCg -3'
miRNA:   3'- ggAGUC-GCCGCuuCgGGCguua-----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 38516 0.66 0.639894
Target:  5'- cCUUCAGC-GCGAAGUCgaGCGcgACGg -3'
miRNA:   3'- -GGAGUCGcCGCUUCGGg-CGUuaUGCg -5'
8151 3' -55.3 NC_001978.2 + 26252 0.66 0.639894
Target:  5'- --aCGGCgugaccugGGUGAAGUCgGCAAcGCGCg -3'
miRNA:   3'- ggaGUCG--------CCGCUUCGGgCGUUaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 23228 0.66 0.639894
Target:  5'- aUCUCGacCGGCGAacAGUCCGUugcggACGCu -3'
miRNA:   3'- -GGAGUc-GCCGCU--UCGGGCGuua--UGCG- -5'
8151 3' -55.3 NC_001978.2 + 40000 0.66 0.628723
Target:  5'- gCUUCGGCGGCuucAAGUUCgGCAAgcCGCu -3'
miRNA:   3'- -GGAGUCGCCGc--UUCGGG-CGUUauGCG- -5'
8151 3' -55.3 NC_001978.2 + 19462 0.66 0.617556
Target:  5'- gCCUCAGCGGCaAGGaucuUCGCGcacCGCu -3'
miRNA:   3'- -GGAGUCGCCGcUUCg---GGCGUuauGCG- -5'
8151 3' -55.3 NC_001978.2 + 25593 0.66 0.617556
Target:  5'- aCCUgAGCGGCaaguGCCCcgGUcGUugGCu -3'
miRNA:   3'- -GGAgUCGCCGcuu-CGGG--CGuUAugCG- -5'
8151 3' -55.3 NC_001978.2 + 17589 0.67 0.606403
Target:  5'- -gUCGGCGGagaCGGAgccGCCCGCA--ACGUc -3'
miRNA:   3'- ggAGUCGCC---GCUU---CGGGCGUuaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 30051 0.67 0.606403
Target:  5'- gCUCAGC-GCauGGCuCCGCAuggugGCGCa -3'
miRNA:   3'- gGAGUCGcCGcuUCG-GGCGUua---UGCG- -5'
8151 3' -55.3 NC_001978.2 + 20379 0.67 0.606403
Target:  5'- gCCgaAGCGGCGAAGgCCGaAGUcgagucGCGCc -3'
miRNA:   3'- -GGagUCGCCGCUUCgGGCgUUA------UGCG- -5'
8151 3' -55.3 NC_001978.2 + 27432 0.67 0.595272
Target:  5'- -gUCGGC-GUGAAGUUCGCug-ACGCg -3'
miRNA:   3'- ggAGUCGcCGCUUCGGGCGuuaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 28080 0.67 0.595272
Target:  5'- aCUgAGCGGCuuGAGGCCgGUcccAAUGcCGCc -3'
miRNA:   3'- gGAgUCGCCG--CUUCGGgCG---UUAU-GCG- -5'
8151 3' -55.3 NC_001978.2 + 18161 0.67 0.595272
Target:  5'- gCgUCGGCGcCGGAGUaaCCGCGcuUGCGCu -3'
miRNA:   3'- -GgAGUCGCcGCUUCG--GGCGUu-AUGCG- -5'
8151 3' -55.3 NC_001978.2 + 10800 0.67 0.583065
Target:  5'- cCCUUcGCGGCacgccccacagcgGAAGCaaGCGAcgACGCa -3'
miRNA:   3'- -GGAGuCGCCG-------------CUUCGggCGUUa-UGCG- -5'
8151 3' -55.3 NC_001978.2 + 13641 0.67 0.573115
Target:  5'- aCUCAGCGGCaauGGCgacUCGCGccUAUGCg -3'
miRNA:   3'- gGAGUCGCCGcu-UCG---GGCGUu-AUGCG- -5'
8151 3' -55.3 NC_001978.2 + 38200 0.67 0.562108
Target:  5'- aCgUCAGCGGCuc-GCCC-CG-UGCGCu -3'
miRNA:   3'- -GgAGUCGCCGcuuCGGGcGUuAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.