miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8161 5' -58 NC_001978.2 + 5918 0.66 0.531299
Target:  5'- uUCGCuuCGCCGGuuCGcUCCGuGUCGACc -3'
miRNA:   3'- -AGUGcuGCGGCCc-GUuAGGC-CAGCUG- -5'
8161 5' -58 NC_001978.2 + 2581 0.66 0.531299
Target:  5'- cCACGACGgcaaCCcGGC-GUUgGGUCGGCa -3'
miRNA:   3'- aGUGCUGC----GGcCCGuUAGgCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 33623 0.66 0.531299
Target:  5'- gUCACGGCGCCgacaaGGGCGAcacCCGcaauggcagCGGCa -3'
miRNA:   3'- -AGUGCUGCGG-----CCCGUUa--GGCca-------GCUG- -5'
8161 5' -58 NC_001978.2 + 29242 0.66 0.531299
Target:  5'- uUCACGACGgCauacguacGGU--UCCGGUCGAg -3'
miRNA:   3'- -AGUGCUGCgGc-------CCGuuAGGCCAGCUg -5'
8161 5' -58 NC_001978.2 + 5152 0.66 0.520771
Target:  5'- -gACGACGCCguucuucgugcGGGCAAcCUGGgugaGGCa -3'
miRNA:   3'- agUGCUGCGG-----------CCCGUUaGGCCag--CUG- -5'
8161 5' -58 NC_001978.2 + 16246 0.66 0.520771
Target:  5'- aCACGAaGCCGGGUccgaCGGUC-ACg -3'
miRNA:   3'- aGUGCUgCGGCCCGuuagGCCAGcUG- -5'
8161 5' -58 NC_001978.2 + 2009 0.66 0.520771
Target:  5'- --cCGAaGCUGGGUGAgaCGGUCGACc -3'
miRNA:   3'- aguGCUgCGGCCCGUUagGCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 11886 0.66 0.520771
Target:  5'- gUAUGGC-CCGGGUGAUcaCCGGUugCGGCu -3'
miRNA:   3'- aGUGCUGcGGCCCGUUA--GGCCA--GCUG- -5'
8161 5' -58 NC_001978.2 + 15565 0.66 0.499966
Target:  5'- -aACGuACGUCGGcGUAGUCgGG-CGGCa -3'
miRNA:   3'- agUGC-UGCGGCC-CGUUAGgCCaGCUG- -5'
8161 5' -58 NC_001978.2 + 20650 0.66 0.499966
Target:  5'- cCGCcgucAgGUCGGGCAGaCCGGUCGcCg -3'
miRNA:   3'- aGUGc---UgCGGCCCGUUaGGCCAGCuG- -5'
8161 5' -58 NC_001978.2 + 25874 0.66 0.499966
Target:  5'- uUCACGcuGCGCCugagcgaaGGGCuugCCGGgcacgguaUCGACg -3'
miRNA:   3'- -AGUGC--UGCGG--------CCCGuuaGGCC--------AGCUG- -5'
8161 5' -58 NC_001978.2 + 15536 0.66 0.489703
Target:  5'- -gGCGACGUC-GGCAa---GGUCGACg -3'
miRNA:   3'- agUGCUGCGGcCCGUuaggCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 37175 0.66 0.479538
Target:  5'- cCAUGGCGCCcaGGGUAAgaCGGUC-ACg -3'
miRNA:   3'- aGUGCUGCGG--CCCGUUagGCCAGcUG- -5'
8161 5' -58 NC_001978.2 + 16284 0.66 0.479538
Target:  5'- aC-CGACGUCacGGCGuUCgGGUCGGCa -3'
miRNA:   3'- aGuGCUGCGGc-CCGUuAGgCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 28055 0.66 0.476509
Target:  5'- cCGuCGGCGCCggacacucaGGGCGAccuaacggcggucuUCCGGUCG-Cu -3'
miRNA:   3'- aGU-GCUGCGG---------CCCGUU--------------AGGCCAGCuG- -5'
8161 5' -58 NC_001978.2 + 24833 0.67 0.469478
Target:  5'- -uGCGGCGCUgGGGCua-CCGGUgcgccuacugCGACg -3'
miRNA:   3'- agUGCUGCGG-CCCGuuaGGCCA----------GCUG- -5'
8161 5' -58 NC_001978.2 + 18918 0.67 0.459527
Target:  5'- -gACGACGaCGGGCAGgcucaggcgcUCCGcagcGUCGAUa -3'
miRNA:   3'- agUGCUGCgGCCCGUU----------AGGC----CAGCUG- -5'
8161 5' -58 NC_001978.2 + 30437 0.67 0.459527
Target:  5'- aCGCGA-GCCGGGCGGcUUCGG-CG-Cg -3'
miRNA:   3'- aGUGCUgCGGCCCGUU-AGGCCaGCuG- -5'
8161 5' -58 NC_001978.2 + 26001 0.67 0.459527
Target:  5'- gCACGACGCCGu-CAAgUCGGcUCGACc -3'
miRNA:   3'- aGUGCUGCGGCccGUUaGGCC-AGCUG- -5'
8161 5' -58 NC_001978.2 + 11440 0.67 0.459527
Target:  5'- uUCGUGAUgGCaCGGGCAcgCaagCGGUCGGCg -3'
miRNA:   3'- -AGUGCUG-CG-GCCCGUuaG---GCCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.