miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8176 3' -55.6 NC_001978.2 + 4778 0.66 0.63573
Target:  5'- cGCGCC-GCCGAcUGaagAGCGcgaUUCCCa -3'
miRNA:   3'- uCGCGGaCGGCUaACgg-UUGC---AAGGG- -5'
8176 3' -55.6 NC_001978.2 + 23718 0.66 0.63573
Target:  5'- cAGCGCCacccuUGCCGAcgcGCuCAACGUcgUCUUc -3'
miRNA:   3'- -UCGCGG-----ACGGCUaa-CG-GUUGCA--AGGG- -5'
8176 3' -55.6 NC_001978.2 + 41413 0.66 0.63573
Target:  5'- gGGCGgCU-CCGAagUUGgCGGCGUgugCCCu -3'
miRNA:   3'- -UCGCgGAcGGCU--AACgGUUGCAa--GGG- -5'
8176 3' -55.6 NC_001978.2 + 32285 0.66 0.624496
Target:  5'- uGGCGCgCUGCCGcucaGCCucagccguGCGccaUCCCu -3'
miRNA:   3'- -UCGCG-GACGGCuaa-CGGu-------UGCa--AGGG- -5'
8176 3' -55.6 NC_001978.2 + 35558 0.66 0.624496
Target:  5'- cAGCGCCggaUGUCGA--GCCGgagACGgcgCCCc -3'
miRNA:   3'- -UCGCGG---ACGGCUaaCGGU---UGCaa-GGG- -5'
8176 3' -55.6 NC_001978.2 + 12911 0.66 0.61327
Target:  5'- aAGCGCgauacgGCCGAcgccacccGCCGACGUgcUUCCg -3'
miRNA:   3'- -UCGCGga----CGGCUaa------CGGUUGCA--AGGG- -5'
8176 3' -55.6 NC_001978.2 + 16679 0.66 0.598702
Target:  5'- cGCGCUUGCCGcUaugcggucaacgcaUGUCGGCGccgUUCCg -3'
miRNA:   3'- uCGCGGACGGCuA--------------ACGGUUGCa--AGGG- -5'
8176 3' -55.6 NC_001978.2 + 20407 0.66 0.590877
Target:  5'- cGCGCCgGUCG---GCCGACGUcgCCg -3'
miRNA:   3'- uCGCGGaCGGCuaaCGGUUGCAa-GGg -5'
8176 3' -55.6 NC_001978.2 + 4693 0.66 0.590877
Target:  5'- --aGCUgggGCCGGUUGugaauCCGGCGUaCCCa -3'
miRNA:   3'- ucgCGGa--CGGCUAAC-----GGUUGCAaGGG- -5'
8176 3' -55.6 NC_001978.2 + 29853 0.66 0.589761
Target:  5'- cAGUGaccccggucacucCCUGCCcgGGUUGCCGAC-UUCCUu -3'
miRNA:   3'- -UCGC-------------GGACGG--CUAACGGUUGcAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 27833 0.66 0.579731
Target:  5'- uGCGCCgUGCCGAacugaaccgUGCgCAGCuuGUaCCCg -3'
miRNA:   3'- uCGCGG-ACGGCUa--------ACG-GUUG--CAaGGG- -5'
8176 3' -55.6 NC_001978.2 + 12765 0.66 0.579731
Target:  5'- uGGCGaCgCUGCCGAccgGCauuACGcgCCCg -3'
miRNA:   3'- -UCGC-G-GACGGCUaa-CGgu-UGCaaGGG- -5'
8176 3' -55.6 NC_001978.2 + 26312 0.67 0.56863
Target:  5'- cGGCGCUUgugcucGCCGGUUGCCugcCGgagUCgCg -3'
miRNA:   3'- -UCGCGGA------CGGCUAACGGuu-GCa--AGgG- -5'
8176 3' -55.6 NC_001978.2 + 25015 0.67 0.557582
Target:  5'- -cCGCCgacugaGCCgGGUUGCCGAC--UCCCu -3'
miRNA:   3'- ucGCGGa-----CGG-CUAACGGUUGcaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 39893 0.67 0.557582
Target:  5'- cGCGCCUGCCGcgcgGUCuuCGUacagCUCu -3'
miRNA:   3'- uCGCGGACGGCuaa-CGGuuGCAa---GGG- -5'
8176 3' -55.6 NC_001978.2 + 16456 0.67 0.546596
Target:  5'- cAGCGCUUGCgGAgu-CCAACuGUUCUUc -3'
miRNA:   3'- -UCGCGGACGgCUaacGGUUG-CAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 33534 0.67 0.546596
Target:  5'- aAGCGCgUUGCCGc-UGCCAuuGCGggugucgCCCu -3'
miRNA:   3'- -UCGCG-GACGGCuaACGGU--UGCaa-----GGG- -5'
8176 3' -55.6 NC_001978.2 + 22490 0.67 0.546596
Target:  5'- cAGCGCC-GUCGAacuCCGGCaucgGUUCCCg -3'
miRNA:   3'- -UCGCGGaCGGCUaacGGUUG----CAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 12835 0.67 0.546596
Target:  5'- gGGCGCguaaUGCCGGUcGgCAGCGUcgCCa -3'
miRNA:   3'- -UCGCGg---ACGGCUAaCgGUUGCAa-GGg -5'
8176 3' -55.6 NC_001978.2 + 22994 0.67 0.535681
Target:  5'- cGCGUUguaccGCCcgGGUUGCCGACG-UCCUu -3'
miRNA:   3'- uCGCGGa----CGG--CUAACGGUUGCaAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.