miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8186 5' -56.9 NC_001978.2 + 39905 0.66 0.558881
Target:  5'- gGGUccGUCGUaCGCGcCUGCCGCgCGGucuuCGUa -3'
miRNA:   3'- -UCG--UAGUAaGCGC-GACGGCG-GCU----GCG- -5'
8186 5' -56.9 NC_001978.2 + 10719 0.66 0.558881
Target:  5'- uGCGUCG-UCGCuuGCUuCCGCUGugGg -3'
miRNA:   3'- uCGUAGUaAGCG--CGAcGGCGGCugCg -5'
8186 5' -56.9 NC_001978.2 + 1602 0.66 0.555605
Target:  5'- cAGCGacagaUCAU---CGCUGCCGCCaacgaccgcaaucaGGCGCg -3'
miRNA:   3'- -UCGU-----AGUAagcGCGACGGCGG--------------CUGCG- -5'
8186 5' -56.9 NC_001978.2 + 35038 0.66 0.547981
Target:  5'- -cCGUCAg--GUGCUGcCCGCgCGugGCu -3'
miRNA:   3'- ucGUAGUaagCGCGAC-GGCG-GCugCG- -5'
8186 5' -56.9 NC_001978.2 + 19480 0.66 0.547981
Target:  5'- aGGCGcUC-UUCGCGCU-CCGCCucaGCg -3'
miRNA:   3'- -UCGU-AGuAAGCGCGAcGGCGGcugCG- -5'
8186 5' -56.9 NC_001978.2 + 29362 0.66 0.547981
Target:  5'- uGCAugaccauggacUUGUUCgGCGUgcccgucGUCGCCGACGCu -3'
miRNA:   3'- uCGU-----------AGUAAG-CGCGa------CGGCGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 18086 0.66 0.547981
Target:  5'- uGGCAgcgCAagCGCGgUuacuccGgCGCCGACGCu -3'
miRNA:   3'- -UCGUa--GUaaGCGCgA------CgGCGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 23909 0.66 0.537149
Target:  5'- aAGC--CcgUCGCGCUGUgcugagugagcgUGCuCGACGCu -3'
miRNA:   3'- -UCGuaGuaAGCGCGACG------------GCG-GCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 9558 0.66 0.537149
Target:  5'- -uUAUCGUUCGCGCgGgUGgCGACGa -3'
miRNA:   3'- ucGUAGUAAGCGCGaCgGCgGCUGCg -5'
8186 5' -56.9 NC_001978.2 + 1837 0.66 0.537149
Target:  5'- cGGCAggGUUCaaGCccuGUUGCCGuCCGGCGUc -3'
miRNA:   3'- -UCGUagUAAG--CG---CGACGGC-GGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 27248 0.66 0.526391
Target:  5'- gGGCGUgc-UCGaCGCUGCCGaCGAcucCGCg -3'
miRNA:   3'- -UCGUAguaAGC-GCGACGGCgGCU---GCG- -5'
8186 5' -56.9 NC_001978.2 + 7658 0.66 0.526391
Target:  5'- cGguUCGUaaCGCGCUGCCGacguaCGAagGCa -3'
miRNA:   3'- uCguAGUAa-GCGCGACGGCg----GCUg-CG- -5'
8186 5' -56.9 NC_001978.2 + 3050 0.66 0.523179
Target:  5'- cGCGUCGguccggcuucugUCGgagacgauugccaCGCUGCCGCUGA-GCa -3'
miRNA:   3'- uCGUAGUa-----------AGC-------------GCGACGGCGGCUgCG- -5'
8186 5' -56.9 NC_001978.2 + 27138 0.66 0.515715
Target:  5'- cGGUcaagGUCGUagUCGCGCU-CUuCCGGCGCg -3'
miRNA:   3'- -UCG----UAGUA--AGCGCGAcGGcGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 19712 0.67 0.494635
Target:  5'- aGGCGUCc-UUGCGCggGUCGCUGACc- -3'
miRNA:   3'- -UCGUAGuaAGCGCGa-CGGCGGCUGcg -5'
8186 5' -56.9 NC_001978.2 + 22124 0.67 0.494635
Target:  5'- --gGUCGUgCGCuucGCUGCCcagGUCGGCGCg -3'
miRNA:   3'- ucgUAGUAaGCG---CGACGG---CGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 491 0.67 0.494635
Target:  5'- aAGCAUCGggUGCGCgaccgGCUGaCCGuuGUa -3'
miRNA:   3'- -UCGUAGUaaGCGCGa----CGGC-GGCugCG- -5'
8186 5' -56.9 NC_001978.2 + 32299 0.67 0.494635
Target:  5'- gAGCGcuUCGcgaauggCGCGCUGCCgcucagccucaGCCGuGCGCc -3'
miRNA:   3'- -UCGU--AGUaa-----GCGCGACGG-----------CGGC-UGCG- -5'
8186 5' -56.9 NC_001978.2 + 4374 0.67 0.494635
Target:  5'- cGCAUCGUUCcugGgGCaggGgCGCCGuCGCu -3'
miRNA:   3'- uCGUAGUAAG---CgCGa--CgGCGGCuGCG- -5'
8186 5' -56.9 NC_001978.2 + 17310 0.67 0.484243
Target:  5'- gGGCGUUggUCgGCGUauccgGCgGUCGGCGCu -3'
miRNA:   3'- -UCGUAGuaAG-CGCGa----CGgCGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.