miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8205 5' -56.4 NC_001978.2 + 38200 0.66 0.591911
Target:  5'- aCGuCAGCGGCUCGccccgUGCGCuCCCAcaucuGCCa -3'
miRNA:   3'- cGU-GUCGUUGAGCu----GCGUG-GGGU-----CGG- -5'
8205 5' -56.4 NC_001978.2 + 22882 0.67 0.484243
Target:  5'- aGCGCGGgGACggCGGCGUuguGgCCguGCCa -3'
miRNA:   3'- -CGUGUCgUUGa-GCUGCG---UgGGguCGG- -5'
8205 5' -56.4 NC_001978.2 + 17309 0.68 0.473957
Target:  5'- uGCGCGGguAgUgCGcCGacuCCCCAGCCu -3'
miRNA:   3'- -CGUGUCguUgA-GCuGCgu-GGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 2228 0.77 0.127061
Target:  5'- -uGCGGCAACcaugUCGACGCACCgcgcacgaacugacUCAGCCg -3'
miRNA:   3'- cgUGUCGUUG----AGCUGCGUGG--------------GGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 41393 0.66 0.569842
Target:  5'- uGCACAGC-GCUUGcACGUugCCUucaacgucuucGCCg -3'
miRNA:   3'- -CGUGUCGuUGAGC-UGCGugGGGu----------CGG- -5'
8205 5' -56.4 NC_001978.2 + 37943 0.66 0.569842
Target:  5'- uCACGcGCGACguuguacggGACgGCGCCCCcGCCg -3'
miRNA:   3'- cGUGU-CGUUGag-------CUG-CGUGGGGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 13263 0.66 0.547981
Target:  5'- cCACAGCAA----GC-CGCCCCAGUCg -3'
miRNA:   3'- cGUGUCGUUgagcUGcGUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 15604 0.67 0.526391
Target:  5'- cGCaACAGCGACuUCGuACGCGCugggaCCCGGg- -3'
miRNA:   3'- -CG-UGUCGUUG-AGC-UGCGUG-----GGGUCgg -5'
8205 5' -56.4 NC_001978.2 + 4525 0.67 0.515715
Target:  5'- uCGCAGCGuGC-CGGaagacgUGCGCCCCAGUa -3'
miRNA:   3'- cGUGUCGU-UGaGCU------GCGUGGGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 9826 0.67 0.484243
Target:  5'- aGCuuCAGCAACgCGucuUGCAuguCCUCAGCCu -3'
miRNA:   3'- -CGu-GUCGUUGaGCu--GCGU---GGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 12083 0.67 0.494635
Target:  5'- uGCcaguCGGCaAGCUgaGACGCGCCaUAGCCg -3'
miRNA:   3'- -CGu---GUCG-UUGAg-CUGCGUGGgGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 8602 0.67 0.515715
Target:  5'- gGCGCgaAGCAucgggGCaCGGCGCGaaCCGGCCu -3'
miRNA:   3'- -CGUG--UCGU-----UGaGCUGCGUggGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 9687 0.66 0.590803
Target:  5'- cCugGGCAAuggccuucgucauCUCGGCGCcguucaGCCCCAuggacuuguacGCCg -3'
miRNA:   3'- cGugUCGUU-------------GAGCUGCG------UGGGGU-----------CGG- -5'
8205 5' -56.4 NC_001978.2 + 32350 0.67 0.488388
Target:  5'- gGCACGGCGcgugaacguccguccGCUgGGCGUcgugaCCCGGUCg -3'
miRNA:   3'- -CGUGUCGU---------------UGAgCUGCGug---GGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 6939 0.66 0.58859
Target:  5'- cGCGCcGUcagugguuucagugGACUCGACagaaGCcgACUCCGGCCg -3'
miRNA:   3'- -CGUGuCG--------------UUGAGCUG----CG--UGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 26731 0.67 0.526391
Target:  5'- cCACAGCAccgcgaaacacuGCUCaGACGUauugccgguaauGCCgUAGCCg -3'
miRNA:   3'- cGUGUCGU------------UGAG-CUGCG------------UGGgGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 28396 0.67 0.484243
Target:  5'- cGCGCAGCaugcggcgaaggGugUCGACGUACUCaagaucaAGCg -3'
miRNA:   3'- -CGUGUCG------------UugAGCUGCGUGGGg------UCGg -5'
8205 5' -56.4 NC_001978.2 + 10784 0.67 0.48321
Target:  5'- cCACAGCGgaagcaaGCgaCGACGCAaagccgCCCAGCUu -3'
miRNA:   3'- cGUGUCGU-------UGa-GCUGCGUg-----GGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 34204 0.66 0.580854
Target:  5'- gGCACGcucCGGCg-GACGCACaCCCGGgCa -3'
miRNA:   3'- -CGUGUc--GUUGagCUGCGUG-GGGUCgG- -5'
8205 5' -56.4 NC_001978.2 + 32298 0.66 0.547981
Target:  5'- aGCGCuucGCGAa-UGGCGCgcugccgcucaGCCUCAGCCg -3'
miRNA:   3'- -CGUGu--CGUUgaGCUGCG-----------UGGGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.