miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 5' -45.6 NC_002169.1 + 111675 0.66 0.999982
Target:  5'- gUCGACGcuGGCGAugGcCGUGaACg- -3'
miRNA:   3'- -AGCUGCuuUCGUUugUaGCACaUGau -5'
8485 5' -45.6 NC_002169.1 + 74487 0.66 0.999965
Target:  5'- -gGACGAAuGCAAGCAugugcucugccUCaUGUGCUGc -3'
miRNA:   3'- agCUGCUUuCGUUUGU-----------AGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 58235 0.66 0.999964
Target:  5'- aUCGGCGugGGCgAAACGUgCGUGUucagcguACUGc -3'
miRNA:   3'- -AGCUGCuuUCG-UUUGUA-GCACA-------UGAU- -5'
8485 5' -45.6 NC_002169.1 + 134703 0.66 0.999964
Target:  5'- cUCGACGAguauucgucccgcGAGCAAACAUaaucauaaUGUACg- -3'
miRNA:   3'- -AGCUGCU-------------UUCGUUUGUAgc------ACAUGau -5'
8485 5' -45.6 NC_002169.1 + 118888 0.66 0.999953
Target:  5'- aUCGAUGAGAGCcuguAgAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUGCUUUCGuu--UgUAGC------------ACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 32962 0.66 0.999953
Target:  5'- uUCGACGAAAcgacGCAAAUcgGUCaGcGUACUAg -3'
miRNA:   3'- -AGCUGCUUU----CGUUUG--UAG-CaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 95989 0.66 0.999936
Target:  5'- gUCGACGgcGGCGAcAUGUUGUcGUGCg- -3'
miRNA:   3'- -AGCUGCuuUCGUU-UGUAGCA-CAUGau -5'
8485 5' -45.6 NC_002169.1 + 41801 0.67 0.999887
Target:  5'- cUCGAUGAAcGCAAACAUUGaaUAUUGc -3'
miRNA:   3'- -AGCUGCUUuCGUUUGUAGCacAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 112414 0.67 0.999887
Target:  5'- cUCGACGAAGuCAAACAUCacg-GCUAc -3'
miRNA:   3'- -AGCUGCUUUcGUUUGUAGcacaUGAU- -5'
8485 5' -45.6 NC_002169.1 + 117845 0.67 0.999852
Target:  5'- aCGACGGGAGCGGcgcGCAUCuucuUGUugGCUGc -3'
miRNA:   3'- aGCUGCUUUCGUU---UGUAGc---ACA--UGAU- -5'
8485 5' -45.6 NC_002169.1 + 10969 0.67 0.999752
Target:  5'- uUCGACGAAA-CAAAgAUCaUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUcGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 123108 0.68 0.999682
Target:  5'- gUCGACGAAuucgauauAGCGAACAagaucuacgUCG-GUGCg- -3'
miRNA:   3'- -AGCUGCUU--------UCGUUUGU---------AGCaCAUGau -5'
8485 5' -45.6 NC_002169.1 + 35844 0.68 0.999489
Target:  5'- cCGACGgcAGCGGGCGUCGUu----- -3'
miRNA:   3'- aGCUGCuuUCGUUUGUAGCAcaugau -5'
8485 5' -45.6 NC_002169.1 + 125510 0.68 0.999465
Target:  5'- gUCGACGA--GCAGACAcuggccgcucugCGUGUACc- -3'
miRNA:   3'- -AGCUGCUuuCGUUUGUa-----------GCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 120058 0.69 0.999202
Target:  5'- aCGACG-AAGUggGCAUaCGUGUGg-- -3'
miRNA:   3'- aGCUGCuUUCGuuUGUA-GCACAUgau -5'
8485 5' -45.6 NC_002169.1 + 72007 0.69 0.999202
Target:  5'- aCGACGAAaccgucGGUggGCAUCGU--ACUGu -3'
miRNA:   3'- aGCUGCUU------UCGuuUGUAGCAcaUGAU- -5'
8485 5' -45.6 NC_002169.1 + 70186 0.69 0.999202
Target:  5'- gUCGACGAGGGCAAcaaGUCG-GUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUug-UAGCaCAUgau -5'
8485 5' -45.6 NC_002169.1 + 80408 0.69 0.998992
Target:  5'- uUCGGCGAcgauggguuucguGAGC-GGCAUCGUGaGCa- -3'
miRNA:   3'- -AGCUGCU-------------UUCGuUUGUAGCACaUGau -5'
8485 5' -45.6 NC_002169.1 + 53060 0.7 0.997824
Target:  5'- -gGAUGAAAGCAAAgAUgaUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAgcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105355 0.71 0.992972
Target:  5'- -gGAUGAAAGCAAACAUgaUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUGUAgcACAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.