miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 3' -39.8 NC_002169.1 + 40347 0.67 1
Target:  5'- -----gACAUGAUUgauggGCUUuuUCGUCg -3'
miRNA:   3'- aaauuaUGUACUAGaaa--CGAA--AGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11563 0.66 1
Target:  5'- cUUGA-ACAccAUCUUUGUUUUUGUCa -3'
miRNA:   3'- aAAUUaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 120600 0.66 1
Target:  5'- ----cUACAUGAcucugcuaaaUCUUUGCaagggcgUCGUCa -3'
miRNA:   3'- aaauuAUGUACU----------AGAAACGaa-----AGCAG- -5'
8486 3' -39.8 NC_002169.1 + 10520 0.67 1
Target:  5'- -----cACAacGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaauuaUGUa-CUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 10326 0.7 1
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaauUAUGUACU--------AGAAACGaaAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 105322 0.71 0.999999
Target:  5'- --aAGUACAcaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUacUAgAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 104956 0.73 0.999966
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAuGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 42445 0.74 0.999935
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauuaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 42376 0.74 0.999935
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauuaUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 11281 0.75 0.999645
Target:  5'- aUUUAAUACAcaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUacUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 52662 0.76 0.999417
Target:  5'- uUUUAGUACAcGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUaCUAgAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 11570 0.76 0.999417
Target:  5'- -cUAGUACucGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUUAUGuaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 41872 0.76 0.998841
Target:  5'- ---cAUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaauUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 52978 0.77 0.998232
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUUAUGUacUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 119324 0.79 0.993635
Target:  5'- ---cAUAgAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauUAUgUaCUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 52898 0.79 0.992528
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUUAUGUAcUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 41999 0.79 0.992528
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- aaaUUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 105601 0.8 0.988263
Target:  5'- ---cAUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaauUAUGUacUAGAAACGAAAGCAG- -5'
8486 3' -39.8 NC_002169.1 + 71637 0.8 0.984508
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaUUAUGUaCUAGAAACGAAAGcAG- -5'
8486 3' -39.8 NC_002169.1 + 105044 0.81 0.979902
Target:  5'- uUUUAAUauuGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUA---UGUA----------CUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.