miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 5' -47.6 NC_002169.1 + 42029 0.85 0.394883
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUgAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 11443 0.83 0.491774
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 11098 1.1 0.013529
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACCAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 11198 0.95 0.116365
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCaCAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 119484 0.86 0.368308
Target:  5'- uUGGACGAAAGCAAAGAUCGUcUAUgAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCAcAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 53282 0.82 0.522961
Target:  5'- -cGACGAAAGCAAAGAUCaUGUACUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 119760 0.94 0.126534
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 11730 0.82 0.554881
Target:  5'- -cGAUGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCaCAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 104995 0.8 0.620147
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 41930 0.88 0.296188
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAUgGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCaCAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 119582 1.06 0.026679
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 10976 0.83 0.481568
Target:  5'- -cGACGAAAGCAAAcAUCGUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 53062 0.83 0.491774
Target:  5'- uUGGAUGAAAGCAAAGAUgaUGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAgcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 71795 0.9 0.206563
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 105662 1.04 0.034746
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 104867 0.85 0.394883
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUagGCUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCaCA--UGGu -5'
8486 5' -47.6 NC_002169.1 + 42220 0.86 0.342986
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAuggu -5'
8486 5' -47.6 NC_002169.1 + 11476 0.67 0.99786
Target:  5'- -cGAUGAAAGCAAAcAUCaUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105353 0.73 0.930579
Target:  5'- uUGGAUGAAAGCAAAcAUgaUGUACCGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAgcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 52934 0.7 0.986408
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUgAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCaCAUGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.